Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1629 ATGGCGGCGGCGAAGCTACGGTGGGGAGAGTTAGAAGAAGACGACGGCGAAGATTTAGATTTCCTTCTACCAGCAAGGCAAGTCATTGGTCCTGACGTTAATGGTATCAAGAAAGTTATTGATTACAAATTCGATGAAGAAGGAAACAAAGTTAAGATCACTACCACCACTCGCACTCGCAAACTCGCCAACGCGCGTCTTACTAAACGCGCCGTCGAACGACGCTCTTGGCCTAAGTTCGGTGATGCTGTTCATGAAGATGTTGGTAGCCGCCTCACTATGGTTTCTACTGAAGAGATTGTCCTTGAGCGTCCCAAGCCACTAGGTGCCAAAGCAGAGGAGTCACAGGCTGCTGGAGAGCCATTTCAGAGAGGTGCTGTGCTTATGGTTTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAAGTGTCCATACAAGGATCTTGCCCCACCACCTGAAGGATTCGTCGACAAGCCTACAGCATCAGATGCTTCAACTGCTGCGACCGGTGCAACCAAGGGATCATATGTGCCTCCTAGTATGAGAGCAGGTGCAGATAGGACTAGTGGATCAGATATGCGCCGTAGGAATGATGAGAATTCTGTAAGGGTCACCAACCTCTCAGAGGACACCAGAGAACCTGATTTGCTTGAGCTGTTCCGTCCTTTTGGTGCCGTAAGCAGAGTTTATGTTGCTATTGACCAGAAGACTAGCATGAGCAGGGGATTTGGCTTTGTTAACTTTGTTAGCAGGGAAGATGCACAAAGAGCAATCAACAAACTCAATGGATATGGCTATGATAATCTCATCCTCAGAGTTGAATGGGCCACCCCAAGGACAACCTAA 852 0.4847 MAAAKLRWGELEEDDGEDLDFLLPARQVIGPDVNGIKKVIDYKFDEEGNKVKITTTTRTRKLANARLTKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEIVLERPKPLGAKAEESQAAGEPFQRGAVLMVCRTCGKKGDHWTSKCPYKDLAPPPEGFVDKPTASDASTAATGATKGSYVPPSMRAGADRTSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTSMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1629 283 CDD eIF3G 34 149 IPR024675 -
Lal16g1629 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Lal16g1629 283 MobiDBLite consensus disorder prediction 190 204 - -
Lal16g1629 283 MobiDBLite consensus disorder prediction 156 204 - -
Lal16g1629 283 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 4 283 - -
Lal16g1629 283 SUPERFAMILY RNA-binding domain, RBD 187 282 IPR035979 GO:0003676
Lal16g1629 283 Pfam Eukaryotic translation initiation factor 3 subunit G 27 150 IPR024675 -
Lal16g1629 283 SMART rrm1_1 203 276 IPR000504 GO:0003723
Lal16g1629 283 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 4 283 - -
Lal16g1629 283 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 5 282 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lal16g1629 283 PIRSF Transl_init_eIF-3_RNA-bind 1 283 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lal16g1629 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 270 IPR000504 GO:0003723
Lal16g1629 283 CDD RRM_eIF3G_like 203 278 IPR034240 -
Lal16g1629 283 Gene3D - 159 283 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1629 Lal-Chr16 14748740 14750846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1629 4 283 Eukaryotic Initiation Factors Gene Family AT3G11400 68.471 2.89e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1629 K03248 - gmx:100818725 490.345