Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1508 ATGGATCACGCTGAATTAACCACCGATCAGGTTCTGAGGAGGGATATCCCATGGGAGACCTACATGGCCACTAAGCTCATCTCCGGTACAAGCCTTCAGCTCATGCGTCGTTATGATCACCGAGCCGAAAGTCACAGAGCACAGTTGCTTGATGATGATGGTCCAGCTTATGTCCGGGTGTTTATTAAAGTTTTGCATGATATTTTTAAAGAAGACACCGTAGAGTATGTTTTGGCGCTGGTTGATGAAATGCTTGCAGCAAACCCAAAAAGAGCAAGGCTGTTTCATCATAGTACCCTTGCTGTTGAAGATACTTATGAACCTTTCTTAATTTATAGCCTCAGACCACAGAACCGCACCCTTGGAACAGAGACCGTATTGCTTTGGAATGGAAATTGGTTCATAAAAGAGAAAAGTTGTAAGATCCTTGCTTTAATAGTTAGTGCCAGGACAACAAATCAAAATGACATTGTTTCAAATGGAGAAGCAACAAACTCGAAGAATCCGTTTACCGTTATCGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGAACAGCTGAAGAAACCTTCTCACCCTATTCGTGGAGTCCCGACTGCTGTCAATTGCCTTTCAACTATACTTAAGGAACCTATGGTTAGGTCTTCTTTTGTTCAAGCAGATGGAGTCAAGCTGCTTGTGCCATTGATTTCTCTAGCATCCACCCAACAGTCTATTCAGCTTCTGTATGAAACATGCCTCTGCATATGGCTCTTATCCTATTATGAGCCTGCAATTGAATATTTGGCTACGTCAGGGGCCCTTCCGCGACTGATTGATGTTGTTAAGAGCTCTACAAAAGAGAAGGTTGTTAGAGTAGTTGTCTTGACTCTTAAAAACTTGCTGTCAAAAGGGACCTTCGGTGCTCAGATGGTTGGCTTTCAGCTGCCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTGAATTCCCTTGAAGAGGGGCTTAAGGATAACATTAAGAAACTTAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTGCTTGGCCATCTGGATTGGTCTCCCTTGCACAAAGATCGCTTATTTTGGCGAGAAAATATTACCAACTTTGAAGAGAATGATTTCCAGATTCTAAGGGTCCTGATAACAGTTTTGGACACATCCAATGATCCAAGGACTCTGGCTGTTGTTTGCTTTGACCTTTCACAGTTCATTCAGCATCATCCTTCCGGGAGGCTCATTGTGGCGGATCTTAAAGCTAAGGAACGAGTAATGAAATTAATGAATCACGAGAATGCTGAGGTTACTAAAAGTGCATTACTCTGCATCCAACGACTTTTCTTAGGATCAAAGTATGCAAGCTTTTTGCAGGCTTAG 1404 0.4231 MDHAELTTDQVLRRDIPWETYMATKLISGTSLQLMRRYDHRAESHRAQLLDDDGPAYVRVFIKVLHDIFKEDTVEYVLALVDEMLAANPKRARLFHHSTLAVEDTYEPFLIYSLRPQNRTLGTETVLLWNGNWFIKEKSCKILALIVSARTTNQNDIVSNGEATNSKNPFTVIDDVLIGLVKWLCEQLKKPSHPIRGVPTAVNCLSTILKEPMVRSSFVQADGVKLLVPLISLASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSGALPRLIDVVKSSTKEKVVRVVVLTLKNLLSKGTFGAQMVGFQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPLHKDRLFWRENITNFEENDFQILRVLITVLDTSNDPRTLAVVCFDLSQFIQHHPSGRLIVADLKAKERVMKLMNHENAEVTKSALLCIQRLFLGSKYASFLQA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1508 467 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 267 295 IPR000225 GO:0005515
Lal16g1508 467 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 467 - -
Lal16g1508 467 SUPERFAMILY ARM repeat 7 458 IPR016024 -
Lal16g1508 467 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 467 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lal16g1508 467 Pfam V-ATPase subunit H 3 338 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lal16g1508 467 Gene3D - 358 459 IPR038497 -
Lal16g1508 467 Gene3D - 2 346 IPR011989 -
Lal16g1508 467 PIRSF V-ATP_synth_H 1 466 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lal16g1508 467 Pfam V-ATPase subunit H 344 456 IPR011987 GO:0000221|GO:1902600
Lal16g1508 467 SMART arm_5 211 255 IPR000225 GO:0005515
Lal16g1508 467 SMART arm_5 417 457 IPR000225 GO:0005515
Lal16g1508 467 SMART arm_5 256 297 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1508 Lal-Chr16 12014043 12023036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1508 1 467 Primary Pumps ATPases(2) AT3G42050 73.019 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1508 K02144 - gmx:100788723 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1508 16 12014043 12023036 Lal23g0218 23 2030143 2031253 LSH