Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1506 ATGGGTTGGTTTACTAAATTGCTTAAGGGATCAAGCAGAGGACATCATGGGAGATATAGAGATGCAAGAATCTCGGATAATCATTCCGCGGGTGAGTTGACAGATATTGAGAAAGAAGAAATTGACCGGGCAATCGCGCTCTCTCTTTCGGTGGAAGATGTGAAAGGAAAAAAAGTTGTTGAGGATGATTCTCAATCCGAAGACGATTTACAACTGTGTGAAATTGATGAAGAGGAGGACGAATATATTGGTAAAGTTCAACAAGAGGAAGATGATCAGCTAGTGAAAATTCAGCAAGATAAAGATGAACATTTTGGTGAAATTCAACTCGAGGAAGATGAGCAACTCGCGAGGGCAATTCAAGAAAGCTTAAGAATCGGTTCTCCCCTATCTAACGCCGGTTCTTTATTTCAACCATTTCCACACCTCTTTCCACCAGTATATAGAACCTGTGCTGGCTGCAATGCCGAGATTGGCAATGGAAGATTTTTGAGTTGCGCTGGAGGTGTTTGGCATCCGGAATGTTTCCGTTGCCAAGCTTGCAATCTTCCAATCACAGATTATGAGTTTTCCATGTCTGGAAATCACCGTTACCACAAATCCTGCTACAAGGAACTGCATCACCCAAAATGTGATGTTTGCATGAACTTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGTTACAGAAATACTGTCCATCACATGAGCGCGATGGCACACCTCGTTGTTGTAGCTGTGAAAAAATGGAGTCAAGGGATACAAAATACCTTTTGCTCGATGATGGTCGAAAGTTGTGTCTAGAGTGTCTAGACTCGGCTATTATGGATACTCATGAATGCCAACCTCTCTACCTAGAAATACAAGAATTCTATGAAGGCTTAAATATGAAAATAGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAGGCGTTGAATGAAGCCATGGAGGGAGAAAAAAATGGACATCACCACTTAGCTGAAACTAGAGGACTATGCTTGTCAGAAGAGCAAACTATCACCACTATTTTGAAAAGACCGAAGATCGGGGCAGGCTACAGGATCATAGATATGATAACTGAGCCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCAAGGTTATTAACAGGATCAATTCTGGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGCTATGGTAATCTGAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTGTTGGCTCATATGTGGTTAGATTCCGAGATCTATTCCGTGTCTGGGAATGAAGCTACATCATCATCTTCATCATCGTCATCATCATCGCCTTCTGCCTCTTGTTCGTCATCGAAGAAGGGTAAGCGGTCTGACTTCGAGAAGAAACTCGGCGAGTTTTTTAAACACCAAATTGAGTCAGATAGCTCATCAGCTTATGGAGAAGGGTTCAGACAGGGTAACCAAGCAGTGCTCAAATACGGACTTAGAAGCACCCTTGATCATATTCAAATGACTGGGAGTTTTCCATATTGA 1563 0.4255 MGWFTKLLKGSSRGHHGRYRDARISDNHSAGELTDIEKEEIDRAIALSLSVEDVKGKKVVEDDSQSEDDLQLCEIDEEEDEYIGKVQQEEDDQLVKIQQDKDEHFGEIQLEEDEQLARAIQESLRIGSPLSNAGSLFQPFPHLFPPVYRTCAGCNAEIGNGRFLSCAGGVWHPECFRCQACNLPITDYEFSMSGNHRYHKSCYKELHHPKCDVCMNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCEKMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNGHHHLAETRGLCLSEEQTITTILKRPKIGAGYRIIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSVSGNEATSSSSSSSSSSPSASCSSSKKGKRSDFEKKLGEFFKHQIESDSSSAYGEGFRQGNQAVLKYGLRSTLDHIQMTGSFPY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1506 520 PANTHER PROTEIN DA1-RELATED 2 1 520 IPR045218 -
Lal16g1506 520 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 520 - -
Lal16g1506 520 MobiDBLite consensus disorder prediction 441 462 - -
Lal16g1506 520 Pfam LIM domain 151 205 IPR001781 -
Lal16g1506 520 Gene3D Cysteine Rich Protein 148 210 - -
Lal16g1506 520 SMART uim 36 55 IPR003903 -
Lal16g1506 520 SMART uim 111 130 IPR003903 -
Lal16g1506 520 MobiDBLite consensus disorder prediction 441 465 - -
Lal16g1506 520 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 111 125 IPR003903 -
Lal16g1506 520 CDD LIM_DA1 151 203 - -
Lal16g1506 520 SMART lim_4 150 202 IPR001781 -
Lal16g1506 520 ProSiteProfiles LIM domain profile. 149 209 IPR001781 -
Lal16g1506 520 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 177 235 - -
Lal16g1506 520 ProSitePatterns LIM zinc-binding domain signature. 151 185 IPR001781 -
Lal16g1506 520 Pfam Protein DA1 300 515 IPR022087 -
Lal16g1506 520 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 145 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1506 Lal-Chr16 11996199 12002660 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g1506 DA1-like 1.2e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1506 - - gmx:100806605 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1506 16 11996199 12002660 Lal16g1506 16 11996199 12002660 ECH
Lal23g1377 23 14461309 14466923 Lal16g1506 16 11996199 12002660 PCT
Lal16g1506 16 11996199 12002660 Lal23g1377 23 14461309 14466923 PCT