Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1483 ATGGTAAACAATGATTATATCCATTGTGGCAGTGCTAATCCAACAATTAACAACCAGGGTAACCGTTACCTTTCGCCTCAGAATCCTTTCGCTAAGGAGGTGATACATAGAGTGGATGGAGGGGACCAATGGAAAGGTTGGAATTGGAGGTATGAGGGAGACCTGCTACTGAATGGAGCATTTTTCACTGCTTCAGGAGTTAGAACTGTTGCAAGCTACGCCGGAGCCTCAAGTCTTGGGGGCAAATCCTCTTCTTTGGTTGGAACCCTCACTTCAGGTGCCTGTGTTCTTAACTGTCACAAGGGTAATATATGTTAA 318 0.4528 MVNNDYIHCGSANPTINNQGNRYLSPQNPFAKEVIHRVDGGDQWKGWNWRYEGDLLLNGAFFTASGVRTVASYAGASSLGGKSSSLVGTLTSGACVLNCHKGNIC 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1483 105 PANTHER PECTATE LYASE 18-RELATED 2 102 IPR045032 GO:0030570
Lal16g1483 105 SUPERFAMILY Pectin lyase-like 2 79 IPR011050 -
Lal16g1483 105 PANTHER PECTATE LYASE 2 102 - -
Lal16g1483 105 Gene3D - 1 98 IPR012334 -
Lal16g1483 105 PRINTS Pollen allergen Amb family signature 6 25 IPR018082 -
Lal16g1483 105 PRINTS Pollen allergen Amb family signature 47 71 IPR018082 -
Lal16g1483 105 PRINTS Pollen allergen Amb family signature 76 99 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1483 Lal-Chr16 11782261 11783206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1483 1 105 Polysaccharide Lyase AT4G13710 58.036 5.83e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1483 K01728 - gmx:100809277 139.043