Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1442 GGGTACTTATGCAAGTTACCTCTAAAACTCGCCTCACACCCCAAAATTTCAGTCATCTCCCACATTTCACTAATTGTCAAATTTCAAAACCCTAACCTTTTCTCCTCTCTATTATTCTCGTTTGCGTTGAATGCACAGTTGGCAATAGAACTTGTTAGTGATTTTGATGTGAACATTTGGTTCATGCTGAAAAAGTCAATGACTCAACTCCTTACAAGGGACAAATACTTAACTGTGAAGAAAATGCATACAACTTTTACTAGATGTGGCTTTTCAGTTAGAAGATGTCATACTTACAAACGTAATGAAAATAACAGTGAGTATATTTATAGAAGAGAGTTCATTTGTCATCAAGTTGGTATTGTCAACCAACAAAAAGTTAATGAACTAAAAAAACAGAGGAAACGAAAAAGTTCAAGATTTAATTGTAATGTAAAATTCTTTATTACTAAAATACCAATTAACTTCGAAGAACGTTGGGTGGTTACATATTTTAGTAATTCTAATAACCATGCATTGTTGGATGATAAAGAAGTTCGGTTTCTTCCTGCTTATCATGACATACCTAACAATGATCAAAGTCGTATATTACTGTTATCTAAAGTTGATTGCTCAATAAGTATTATAATAGGAGTGCTTGAATTGGAGAATGGAATAGAGGCATGCTGTTTGCCATATTTGGAGAAAGATATAAGAAATTTTTTGCAATCTCAAAGTAGTGTTGGTAATGAAAATGATGCTTCAAATGTTCTCAAATTATGCAGAAGTTTAAAAGATATAGATGATGTCTTTCAATATGATTTCACCATGGATGAAAGTAACAAATTGGAGTATATTATTTGGGTATTTGGTGATTCAATTCGAGCATATGAAGCTTTTGGAGATGTGGTTGTCTTTGATACTACATATCGAATAAATTGTTATGATATGCCTCTTGGTCTATGGGTTAGAATTGATAATCATGGCAATTCAATTTTATTTGGATGTGTTCTATTGCGAGATGAGAAGATACATTCGTTCATATGGGATTTAAAGGTTGGAGTTGGTGTCAACATTAGAAATCAAGCTGGAGAAGAAGCAAGAATGCGTCAAAAGTATCATAATCCTCAAATTAGAACAAGTTTTCTCATCGAGGAACATGCTGCAAATATACTCACACCTTATGCATTTGAGTTACTCCAACTTGAAATTGAGTTATCTTCAAAATACACAACAACTAAAGTTGATAGTGACTCTTACATTGTGCGACATCATACTGAGCTTGATGGAGGCCGATTGGTAAGTCTGATAAAAGAGAAAGGTCAAGAATCAATTCATTGTTCTTGTAGAGAATTTGAATTTTGTGGGATATTGTGTAGACATGGTATTCGAGGGTTGTTGAAGAATGACTATATTTACCTATCAGATGTGAAATTTTGTCCGGCCCAAAACACCTTCCAAAATATACACATATATATATATATATAA 1467 0.3292 GYLCKLPLKLASHPKISVISHISLIVKFQNPNLFSSLLFSFALNAQLAIELVSDFDVNIWFMLKKSMTQLLTRDKYLTVKKMHTTFTRCGFSVRRCHTYKRNENNSEYIYRREFICHQVGIVNQQKVNELKKQRKRKSSRFNCNVKFFITKIPINFEERWVVTYFSNSNNHALLDDKEVRFLPAYHDIPNNDQSRILLLSKVDCSISIIIGVLELENGIEACCLPYLEKDIRNFLQSQSSVGNENDASNVLKLCRSLKDIDDVFQYDFTMDESNKLEYIIWVFGDSIRAYEAFGDVVVFDTTYRINCYDMPLGLWVRIDNHGNSILFGCVLLRDEKIHSFIWDLKVGVGVNIRNQAGEEARMRQKYHNPQIRTSFLIEEHAANILTPYAFELLQLEIELSSKYTTTKVDSDSYIVRHHTELDGGRLVSLIKEKGQESIHCSCREFEFCGILCRHGIRGLLKNDYIYLSDVKFCPAQNTFQNIHIYIYI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1442 488 Pfam MULE transposase domain 296 345 IPR018289 -
Lal16g1442 488 Pfam SWIM zinc finger 433 454 IPR007527 GO:0008270
Lal16g1442 488 Pfam FAR1 DNA-binding domain 87 174 IPR004330 -
Lal16g1442 488 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 350 469 - -
Lal16g1442 488 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 88 347 - -
Lal16g1442 488 ProSiteProfiles Zinc finger SWIM-type profile. 425 463 IPR007527 GO:0008270
Lal16g1442 488 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 88 347 IPR031052 GO:0006355
Lal16g1442 488 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 350 469 IPR031052 GO:0006355
Lal16g1442 488 SMART 26again6 438 466 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1442 Lal-Chr16 11193754 11196204 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal16g1442 FAR1 2.7e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1442 - - lang:109341341 432.565