Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1409 ATGGATCGGGCTTCGGTAACAGTGGGACCCGGAATGGATATGCCGATCATGCACGATAGTGACCGTTACGATCTGGTACGAGACATAGGTTCTGGAAATTTCGGTGTTGCGAGATTGATGCAAGATAAACATACTAAAGAGCTTGTTGCTGTGAAATATATTGAAAGAGGTGATAAGATTGATGAAAATGTCAAGAGAGAAATAATTAATCACAGGTCTTTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTCATTCTAACTCCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGTGAACTCTTTGAGCGAATCAGTGCTGCAGGACGTTTTACCGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTATGTCACCGTGACTTGAAGTTGGAAAACACTTTGTTGGACGGAAGCCCAGCACCTCGTTTGAAGATATGTGATTTTGGGTACTCTAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTATTGTTGAGGCAAGAGTATGATGGAAAGCTTGCAGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGCTAGTTGGGTCATATCCTTTTGAAGATCCTAATGAACCAAAGGATTTCCGGAAGACAATTCAGAGAGTTCTTAGTGTCCAGTATTCGATTCCTGACTTTGTTCAAATATCTCCGGGGTGTCGCCACCTTATCTCAAGGATCTTTGTCTTTGAGCCGGCAGAGAGAATCATCATGGCTGAAATCTGGAATGATGAATGGTTTCTGAAGAATCTCCCGGCAGATCTGATGGATGAGAAAATGACGGGTAACCAATTTGAAGAGCCAGATCAACCCATGCAGAGCACCGATACCATCATGCAGATAATCTCAGAGGCTACAATACCAGCAGCTGGGACCTATTCTTTAGACAAGTTTATGGCTGATAACATCGATATGGATGAGGATATCGACGAATTAGAATCTGAATCCGAGCTTGATATAGATAGCAGTGGAGAGATAGTGTATGCCATATAA 1089 0.4279 MDRASVTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKHTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISAAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKLADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDFVQISPGCRHLISRIFVFEPAERIIMAEIWNDEWFLKNLPADLMDEKMTGNQFEEPDQPMQSTDTIMQIISEATIPAAGTYSLDKFMADNIDMDEDIDELESESELDIDSSGEIVYAI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1409 362 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1409 362 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lal16g1409 362 SUPERFAMILY Protein kinase-like (PK-like) 15 314 IPR011009 -
Lal16g1409 362 Coils Coil 327 347 - -
Lal16g1409 362 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Lal16g1409 362 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Lal16g1409 362 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1409 362 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 14 356 - -
Lal16g1409 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lal16g1409 362 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1409 362 PANTHER SERINE/THREONINE KINASE 14 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1409 Lal-Chr16 10876106 10882367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1409 22 289 CBL-interacting serine-threonine protein kinases AT4G24400 43.682 5.28e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lal16g1409 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1409 K14498 - gmx:100806949 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1409 16 10876106 10882367 Lal16g1409 16 10876106 10882367 ECH
Lal16g1409 16 10876106 10882367 Lal15g0685 15 4736491 4739507 PCT