Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1407 ATGTCATCATCAAATTCACCATGTGCAGCATGCAAATGTCTACGTAGAAAATGCACACAAGAGTGTCCATTTGCACCATATTTCCCACCAGATAATCCTCAACGCTTCTCATGTGTGCACCGAGTCTTTGGTGCTAGCAATGTGGCCAAGCTTCTAAATGAACTTAACCCTTCACAACGCGAAGATGCAGTTAAGTCTCTTGCATATGAAGCCGAGGCTCGACTTCGCGATCCGGTGTATGGATGCATAGGTTATATTTCAGTATTGCAACACAAGCTTAGGCAAATCCAAACTAATATCCATAGTGCAAAGAAAGAACTCTCTACTTATCTCAACCCTCAAGCAATGCAAGCACTTCAAGCAATGTTGGAAAACCCTAACATGATTCAACCAAATGGGTTGGTTATGCCACAACAACAACATCAACTTGGGAACCCATTTCAAGCCAATATTGGTTTCTCACCTTATGGCAACACCAATGTGATGGTGGCACCACATAATCAATTGCCAATTGGGGATCAAAGACAAGATTTATTAGAGGCTCAACAATTGGCTGCTGAACAAGAATTTCTTAGGCTTAATGGGCTTGAAGGGATGGGTGGAAATGGTAGTGATAATGGGTTTAATCAAATGGGTGTTGGTCCGGAATTGGCTCTAGGAACTTTTGATAATGTTGGTCATTAA 684 0.4181 MSSSNSPCAACKCLRRKCTQECPFAPYFPPDNPQRFSCVHRVFGASNVAKLLNELNPSQREDAVKSLAYEAEARLRDPVYGCIGYISVLQHKLRQIQTNIHSAKKELSTYLNPQAMQALQAMLENPNMIQPNGLVMPQQQHQLGNPFQANIGFSPYGNTNVMVAPHNQLPIGDQRQDLLEAQQLAAEQEFLRLNGLEGMGGNGSDNGFNQMGVGPELALGTFDNVGH 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1407 227 Coils Coil 86 106 - -
Lal16g1407 227 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lal16g1407 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 183 - -
Lal16g1407 227 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lal16g1407 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1407 Lal-Chr16 10828205 10828888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1407 1 139 AS2 family AT5G66870 65.468 5.04e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal16g1407 LOB 3.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1407 - - lang:109340141 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1407 16 10828205 10828888 Lal16g0208 16 1258069 1263122 PCT
Lal16g1407 16 10828205 10828888 Lal15g0153 15 1074025 1076606 PCT
Lal16g1407 16 10828205 10828888 Lal23g1350 23 14296289 14300457 PCT