Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1403 ATGGGTGTCTGCGTTTCAAAACCTTCTGTAAACGACACCGTTTCGAATGGAGAAAACCAAACCCCGAAAAACGACAACAAGAAATCGTCGTTTTCCCCTTTCTGCACTCCCAGCCCTGCGCATTACTTCTCCTCCAAGAAATCTCCGGCGAGATCTCCGGCCAATGCGAGCTCGGAGTCCACGCCGAGGCGGTTTTTTAATAGCGCACTCCGACCACCTTCTCCGGCGAAGCACATAAAGACGTTGCTGGTGAGGAGACAGGGTTCCGTGAAGCCGAACGAGGCGCCGATACCGGAAGGGAACGAGGATAGAGAAGTTGTTGCTTTGGATAAGAATTTTGGGTTCTTGAAGCATTTTGGGAACAAGTATGAGGTTGGAGATGAAGTTGGGAGAGGGCATTTTGGGTATACTTGTGTTGCTAAGTATAAGAAGGGAGAGCTTAAGGGTGAAAAAGTAGCTGTTAAAGTTATATCTAAAGCTAAGCTGTGGAAAGATAGAATTTTTGGAAGATTCATCTATCAGTTCTGTAAAGACTCCACCAGGAAGGAAATCATAGATAAGATGACCACTGCTATTGCTATTGAGGATGTGAGGAGGGAAGTAAAAATACTGAGAGCTTTAAGTGGACATAGGAATCTAGTAAAATTCTACGATGCATATGAGGACCGTGATAACGTCTATATAGTAATGGAATTGTGCGAAGGAGGGGAGCTATTGGATAGAATACTATCAAGAGGTGGGAAATACACAGAGGAAGATGCAAAAGCTGTCATGTCACAAGTACTGAATGTTGTTGCATTTTGCCATCTACAGGGTATCGTGCATCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAAGATGAGAATTCGGAGCTGAAGGTCATAGACTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGGCTTAATGATATCGTTGGTAGTGCATACTATGTTGCTCCAGAAGTTCTGCGTAGAACTTACACTACAGAGGCTGATGTGTGGAGTGTTGGTGTGATTGCATATATTTTATTATGCGGAAACCGTCCATTTTGGGCACAGACTGAATCTGGGATCTTTAAGGCTGTATTGAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTGTCTGACGAGGCAAAGGATTTTGTTAAGCGACTACTAAATAAAGATCCTAAAAAAAGAATGACCGCAACACAAGCATTAGGTCATCCGTGGATTAAAAGTTATAAGGATGTAAGAGTACCCTTGGATATTCTAATGTTTAAGCTCATGAAGGGATATATGCGTTCTTCCTCTCTACGAAAAGCAGCTTTAAGGGCTCTGTCTAAGACATTAGCCGTTGATGAGCTGTCTTATTTAAAGGAGCAGTTTGCACTTTTAGAGCCAAATAAAAGTGGCACCATTAGCTTCAAAAATGTCAAAGCGCTTAATGCATTAGAATATAGAAGGATGGATTTTGATGAGTACTGTGCAGCTGCATTTAGTGTTCATCAACTTGAAGCACTTGATAGGTGGGAGCAACATGCATGCTGTGCTTACGAACTTTTTGAAAAGGATGGAAACAGGGCTATACTCATTGAGGAACTCATTTCGGAGCTTGGCCTTGGTCCATCTGTTCCTGTCCATGCTGTTCTTCATGACTGGATTCGGCACACCGATGGAAAGTTAAGCTTCCTTGGGTTTGTTAAATTGCTGCATGGTCCATCTAGAAATCTTGTGAAACCTCAATAG 1746 0.4261 MGVCVSKPSVNDTVSNGENQTPKNDNKKSSFSPFCTPSPAHYFSSKKSPARSPANASSESTPRRFFNSALRPPSPAKHIKTLLVRRQGSVKPNEAPIPEGNEDREVVALDKNFGFLKHFGNKYEVGDEVGRGHFGYTCVAKYKKGELKGEKVAVKVISKAKLWKDRIFGRFIYQFCKDSTRKEIIDKMTTAIAIEDVRREVKILRALSGHRNLVKFYDAYEDRDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVMSQVLNVVAFCHLQGIVHRDLKPENFLFTSKDENSELKVIDFGLSDFVKPDERLNDIVGSAYYVAPEVLRRTYTTEADVWSVGVIAYILLCGNRPFWAQTESGIFKAVLKADPSFDEPPWPSLSDEAKDFVKRLLNKDPKKRMTATQALGHPWIKSYKDVRVPLDILMFKLMKGYMRSSSLRKAALRALSKTLAVDELSYLKEQFALLEPNKSGTISFKNVKALNALEYRRMDFDEYCAAAFSVHQLEALDRWEQHACCAYELFEKDGNRAILIEELISELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRNLVKPQ 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1403 581 SUPERFAMILY EF-hand 442 571 IPR011992 -
Lal16g1403 581 SUPERFAMILY Protein kinase-like (PK-like) 115 430 IPR011009 -
Lal16g1403 581 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 40 162 - -
Lal16g1403 581 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 187 576 - -
Lal16g1403 581 Pfam Protein kinase domain 123 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1403 581 SMART serkin_6 123 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1403 581 PANTHER SERINE/THREONINE-PROTEIN KINASE 187 576 - -
Lal16g1403 581 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 162 - -
Lal16g1403 581 ProSitePatterns Protein kinases ATP-binding region signature. 129 155 IPR017441 GO:0005524
Lal16g1403 581 MobiDBLite consensus disorder prediction 8 67 - -
Lal16g1403 581 CDD STKc_CAMK 122 410 - -
Lal16g1403 581 Gene3D Transferase(Phosphotransferase) domain 1 239 429 - -
Lal16g1403 581 MobiDBLite consensus disorder prediction 1 74 - -
Lal16g1403 581 ProSiteProfiles Protein kinase domain profile. 123 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1403 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Lal16g1403 581 Gene3D - 430 572 - -
Lal16g1403 581 Gene3D Phosphorylase Kinase; domain 1 125 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1403 Lal-Chr16 10741340 10749474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1403 1 579 EF-hand Containing Proteins AT3G50530 65.396 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal16g1403 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1403 K00924 - vvi:100264733 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1403 16 10741340 10749474 Lal16g0724 16 4673891 4679295 PCT
Lal16g1403 16 10741340 10749474 Lal15g0689 15 4778259 4783566 PCT
Lal16g1403 16 10741340 10749474 Lal23g1348 23 14280446 14284556 PCT