Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1393 ATGCACCCTGCACCGTTCTTGATGAAGACATTTCAGATGGTGAGTGATTCTGAAACTGATGAATTGATATCATGGAGTGAAAGTGGTAACACTTTTGTTGTGTGGAAACATGCTGATTTTTCTAGTCACTTACTTCCTAAGTATTTCAAACACAACAACTTCTCCAGCTTTGTTCGACAGCTCAATACCTATGGATTTCGAAAGACAGTTCCCGACAAATGGGAATTCAGCAACGAACATTTCAAGCGAGGACACAGGGAGCTAATCATCCAAATCAAACGGCGTATGACAGTTTCAACGACCAGAAAATCCAGCGACGGTAGCGGCTGCGGCGACAATAATCCACCGGCAAATTCCGGTGCCGATGACATGGGGTCCACCTCAACAGGGTCCATGGAGGATGCAACAACAAGAGATTTATCATGTGAGAATGAGAAATTGAAGAAGGACAATGAGAAATTGAGTTGCGAGTTAGCACGTGCAAAAAAACAATGTGATGAGCTTGTGGAATTTATGAGGAACTCTTTCGATGTGGGACCTGATCAGATAAACCGTATCATTCAACAGGGTAAGTGTGGGTCCAGCCTCAATACGGTGCGTTTTGATGATGTTGATAATGAAGAAAATGGGGTAGGTGAAACTGGTAGTTGTGTAAGTTTGAAATTGTTTGGGGTTTGGTTGAAAGAAAAAGAGGATGTGAAAGAGAAAATGATGATTAGTGCTAACAATCATAACAACCCCTACAAGAGAGGGCACGAAGACCAAATGAGCTTCAGTGGGCCCAATAAAGAGTTGAAGACCGTTGTATAG 810 0.4259 MHPAPFLMKTFQMVSDSETDELISWSESGNTFVVWKHADFSSHLLPKYFKHNNFSSFVRQLNTYGFRKTVPDKWEFSNEHFKRGHRELIIQIKRRMTVSTTRKSSDGSGCGDNNPPANSGADDMGSTSTGSMEDATTRDLSCENEKLKKDNEKLSCELARAKKQCDELVEFMRNSFDVGPDQINRIIQQGKCGSSLNTVRFDDVDNEENGVGETGSCVSLKLFGVWLKEKEDVKEKMMISANNHNNPYKRGHEDQMSFSGPNKELKTVV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1393 269 Gene3D - 131 175 - -
Lal16g1393 269 PRINTS Heat shock factor (HSF) domain signature 6 29 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g1393 269 PRINTS Heat shock factor (HSF) domain signature 44 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g1393 269 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g1393 269 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 262 - -
Lal16g1393 269 MobiDBLite consensus disorder prediction 243 269 - -
Lal16g1393 269 Pfam HSF-type DNA-binding 6 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g1393 269 MobiDBLite consensus disorder prediction 99 139 - -
Lal16g1393 269 Coils Coil 137 171 - -
Lal16g1393 269 MobiDBLite consensus disorder prediction 99 137 - -
Lal16g1393 269 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 262 IPR027725 -
Lal16g1393 269 Gene3D - 1 97 IPR036388 -
Lal16g1393 269 SMART hsfneu3 2 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g1393 269 SUPERFAMILY "Winged helix" DNA-binding domain 3 95 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1393 Lal-Chr16 10545154 10550380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1393 3 239 HSF AT4G36990 49.398 2.42e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal16g1393 HSF_DNA-bind 3.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1393 K09419 - gmx:100791543 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1393 16 10545154 10550380 Lal16g1393 16 10545154 10550380 ECH
Lal16g0219 16 1313620 1316343 Lal16g1393 16 10545154 10550380 PCT
Lal15g0164 15 1143915 1149378 Lal16g1393 16 10545154 10550380 PCT
Lal16g1393 16 10545154 10550380 Lal16g0219 16 1313620 1316343 PCT
Lal16g1393 16 10545154 10550380 Lal15g0164 15 1143915 1149378 PCT