Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1390 ATGGACGTGGACTTAGTGAAAACTTCAGAGTGTGACAGTAGCAGCATGGACATAATGGCAATGATGATGCAAATGGAAAAGTTTCCTGAATTCTGTGACCCTTTTTATAACAACACTCCCACTACTTACCAAGAAAATGAGTTATTCATCCCTGGTGGGTTCAACGAAGCACCACAACCTTCTTTGCTTGATCCACCACCTTCCAATATCCACAACAACACCAATAATTTTCAACAACCCATGACACTACCTCTTCAACAGCAACAACCCAACGAGGTTATCCCATCAGGGAGGTTATCCAGGAATGTTTCTGATGCTTATCATTCAACCTCAGATAAGAAAAACTCCATGGCTGCAATGAGGGAAATGATTTTCAGAATAGCAGTTATGCAACCAATTCATATAGACCCAGAATCTGTGAAGCCACCTAAGCGAAGGAACGTGAAGATTTCCAAGGATCCACAAAGCGTAGCAGCGAGACACAGGAGGGAAAGGATAAGCGAGAGGATAAGGATTCTTCAAAGGTTAGTACCTGGAGGAACCAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACACTATGTGAAGTTCTTGAAGAAACAGGTGCAGACGTTGGAACAAGTAGGAAGAGGAAGTAGAACCCTTGGAATGGTTGCGTTCCCTACAGGGATGTCCAATGCAAATGTGAACTATTCTCCTTTGTTGATGAAGCAGGGTTGCCAACCTTGTCCAATGGTGGGTTCAACTTCAAAACAATTGTTAAGCTAA 771 0.4254 MDVDLVKTSECDSSSMDIMAMMMQMEKFPEFCDPFYNNTPTTYQENELFIPGGFNEAPQPSLLDPPPSNIHNNTNNFQQPMTLPLQQQQPNEVIPSGRLSRNVSDAYHSTSDKKNSMAAMREMIFRIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGRGSRTLGMVAFPTGMSNANVNYSPLLMKQGCQPCPMVGSTSKQLLS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1390 256 PANTHER TRANSCRIPTION FACTOR HEC2 1 247 - -
Lal16g1390 256 Gene3D - 149 215 IPR036638 GO:0046983
Lal16g1390 256 MobiDBLite consensus disorder prediction 95 115 - -
Lal16g1390 256 SMART finulus 156 205 IPR011598 GO:0046983
Lal16g1390 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Lal16g1390 256 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Lal16g1390 256 CDD bHLH_AtIND_like 151 207 - -
Lal16g1390 256 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 247 IPR045843 GO:0003700|GO:0006355
Lal16g1390 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1390 Lal-Chr16 10493017 10493787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1390 25 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 57.071 1.07e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g1390 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1390 - - gmx:100800816 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1390 16 10493017 10493787 Lal16g1390 16 10493017 10493787 ECH