Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1389 ATGGATTGGATTCGAGGTGAAACAATTGGTAGAGGAAGCTTTGCTACAGTGAATTTAGCAATTTTAAGAAACAATTCAACTAAGTTTTCTTCTCCAACTGCAGTGAAATCCTCTGAGGTTTCAACCTCTTCTTTGTTAAAGAACGAAAAACAAATCCTTGATTACATAGGTTCTTGTCCCAGAATAATTCGTTGTTTCGGAGATGATTATAGCTTTGAGAACGGTTCTGAGTACTACAATTTGTTCCTGGAGTATGCTTCTGGTGGTAGCCTCTACGATCAGCTAAAACTTCACGGTGGAACGTTCTCCGAGACGGTGGTTCGCCGTTGCACGAGGTCTATAATCGAGGGTCTAATTCATATTCATCAAAATGGGTTTGTTCATTGCGATATAAAGCTGCAAAACATTCTCGTATTCAATGGAGGAGATATTAAGATTGCGGATTTTGGCCTATCGAAAAAAACAGGGGAAAAACAGAGCAAAACATATACGGGAACTCCTATGTTTATGTCACCGGAATCAGTTAACGACAACGAGTATGAGTCACCATCGGATATATGGGCTCTAGGTTGTGCTGTGGTGGAAATGGTTACAGGGAAACCGGCATGGAGTATTAAAAATTGGTCAAATATATGGTTACTTTTCGCTCGAATTGCGGTCGGAGAAGAATTGCCTGAGATTCCGGATTCTTTATCAGAAGAAGGTAAGGATTTTCTTGCAAAGTGTTTTGTTAAGGATGCTAGAAAAAGATGGACGGCTGAGATGCTTTTGAAGCATCCATTTGTTGTTGATTGCAGTGTAGTGTTGGAGTGTGTTAATGAAAAAACGTCATCACCAAGAAGCCAATTTGATTTCCCTGATTGGAATTCTAACACCACTGCTTCAGTTATGGGTTCATTTGAATTAAGGGAAGGTAATGAATTGAATTATGATTCATTTTGTGTGTGTAATTTTTATTCTCCGGTGGATCGTCTCAGAGAAATTGTGACAAATCATGGACCAGTGAATTGGTCTGATTCAGATGGTTGGATATGTGTTAGGTGA 1044 0.3937 MDWIRGETIGRGSFATVNLAILRNNSTKFSSPTAVKSSEVSTSSLLKNEKQILDYIGSCPRIIRCFGDDYSFENGSEYYNLFLEYASGGSLYDQLKLHGGTFSETVVRRCTRSIIEGLIHIHQNGFVHCDIKLQNILVFNGGDIKIADFGLSKKTGEKQSKTYTGTPMFMSPESVNDNEYESPSDIWALGCAVVEMVTGKPAWSIKNWSNIWLLFARIAVGEELPEIPDSLSEEGKDFLAKCFVKDARKRWTAEMLLKHPFVVDCSVVLECVNEKTSSPRSQFDFPDWNSNTTASVMGSFELREGNELNYDSFCVCNFYSPVDRLREIVTNHGPVNWSDSDGWICVR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1389 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lal16g1389 347 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Lal16g1389 347 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 299 - -
Lal16g1389 347 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1389 347 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1389 347 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Lal16g1389 347 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Lal16g1389 347 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 299 - -
Lal16g1389 347 CDD STKc_MAPKKK 2 262 - -
Lal16g1389 347 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1389 347 Gene3D Transferase(Phosphotransferase) domain 1 93 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1389 Lal-Chr16 10461631 10462674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1389 1 347 MAP Kinase Kinase Kinase AT4G36950 51.412 2.30e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal16g1389 Pkinase 1.4e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1389 - - aprc:113858661 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1389 16 10461631 10462674 Lal16g1389 16 10461631 10462674 ECH
Lal15g1183 15 12249675 12250712 Lal16g1389 16 10461631 10462674 LSH
Lal15g1183 15 12249675 12250712 Lal16g1389 16 10461631 10462674 PCT
Lal16g1389 16 10461631 10462674 Lal15g1183 15 12249675 12250712 PCT