Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1384 ATGGCTGCAAATAATAATCAGGAACAACAGAACCAACTGGTTGGCCACAAAGAACTAGCTCATAAGAGTCTCCTTGAGAGTGATGCACTCTACCAGTATATATTAGAAACTAGTGTGTTTCCAAGAGAGCATGAAAGCTTGAAAGAACTCCGCCAGATGACAGAAAAGCACCCTTGGAACCTTATGGCCACACCAGCTGATGAAGGACAATTTCTAATGATGTTACTTAAGCTCATCAATGCCAAGAACACAATAGAAATTGGTGTCTTCACTGGTTACTCTCTGCTTTCTACTGCTCTAGCTCTTCCAACTGATGGAAAGATCTTGGCTTTGGATGTGAACCGAGAATATTATGATCTGGGTTTGCCTATAATTCAAAAAGCTGGAGTGGAACACAAAATTGACTTCAAAGAAGGACCTGCTCTTCCTCTTCTAGATGAATTGGTTAAACATGAAAAGAATAAAGGAGCATATGATTTTGTGTTTGTGGATGCTGACAAGGACAATTACTTAAACTACCACAAGAGAGTGATAGAACTTGTGAAGGTTGGGGGATTAATCGGCTACGACAACACCCTATGGGGTGGATCTGTGGTGGCCCCACCTGATGCACCTTTAAAGGATTATGTAAAGCATTTTCGCGGTCATGTTTTGGAACTCAACAAATATCTTGCTAATGACTCTCGAATTGAAATTTGCCAGCTCCCCGTTGGTGATGGCATTACCCTGTGCCGCCGCATCATCTGA 747 0.4203 MAANNNQEQQNQLVGHKELAHKSLLESDALYQYILETSVFPREHESLKELRQMTEKHPWNLMATPADEGQFLMMLLKLINAKNTIEIGVFTGYSLLSTALALPTDGKILALDVNREYYDLGLPIIQKAGVEHKIDFKEGPALPLLDELVKHEKNKGAYDFVFVDADKDNYLNYHKRVIELVKVGGLIGYDNTLWGGSVVAPPDAPLKDYVKHFRGHVLELNKYLANDSRIEICQLPVGDGITLCRRII 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1384 248 PANTHER O-METHYLTRANSFERASE-RELATED 1 248 - -
Lal16g1384 248 CDD AdoMet_MTases 85 187 - -
Lal16g1384 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Lal16g1384 248 Pfam O-methyltransferase 37 247 IPR002935 GO:0008171
Lal16g1384 248 Gene3D Vaccinia Virus protein VP39 12 248 IPR029063 -
Lal16g1384 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 28 246 IPR029063 -
Lal16g1384 248 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 1 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1384 Lal-Chr16 10352821 10355585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1384 4 247 Monolignol Biosynthesis Gene Families AT4G34050 74.590 4.71e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1384 K00588 - gmx:100795858 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1384 16 10352821 10355585 Lal16g1384 16 10352821 10355585 ECH
Lal15g1244 15 13903911 13908323 Lal16g1384 16 10352821 10355585 LSH
Lal16g1384 16 10352821 10355585 Lal23g0195 23 1755728 1758892 LSH
Lal15g1244 15 13903911 13908323 Lal16g1384 16 10352821 10355585 PCT
Lal23g0195 23 1755728 1758892 Lal16g1384 16 10352821 10355585 PCT
Lal16g1384 16 10352821 10355585 Lal15g1244 15 13903911 13908323 PCT
Lal16g1384 16 10352821 10355585 Lal23g0195 23 1755728 1758892 PCT