Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1374 ATGTGGGATCTCAATGACTCACCCGATCAGAGAATAAAGGTGGGTGAGGAGGAATCAGAAGAAGGGTGTTCTTCTTTCAAGACTTCAATGGATTTTGATGATGATAATAATAATAAAGGAAAAGGAGTTGGATCTGTTTCCAATTCAAGCTCTTCTGCAGTTGTCATAGAAGACGGATCAGAAGAAGAAGAAGAAGAACAAGAAGATGAGAAGATGAAGAAAAGCAGCAAGATATTTGGGTTCTCTGTGACCCATGAAGGTGATGATTCCATGGATAATAATGAGAATAATAACCTGCCACAACTTGTTATGACAACTCGGCAGTTTTTTCCGGTTGAGGAAACCGATGTGGCCACCGCATCAGGCGGCGGCGGTGGTGGTGGAATCTCTTCCTTCCCTCGTGCTCACTGGGTTGGTGTGAAGTTTTGTCAATCAGAACCACTTGGTGCTGGAAAATCAGTTGAAGTTTCACAACCAATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGAAGTTCACAGTATAGAGGTGTCACCTTTTACAGAAGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTCCGAGGGGTAGATGCAGATATCAACTTCAACATTGAAGATTATGAAGAAGACTTGAAGCAGATGAGCAATCTTACTAAAGAAGAGTTTGTGCATGTTCTTCGCCGACAAAGCACTGGATTTCCAAGAGGAAGCTCGAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTTGACACTGAGGTTGAAGCAGCAAGGGCCTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACAAATTTTGATCCAAGCATCTATGACAAAGAACTTAACTCTGAATCCACAGGTACTACTAACACTTCTGATCACAATCTAGACTTAAGTTTGGGCAATTCTAGCTCCAAGCTTAGTAATCACATTCCAAATACTTCAACTCATGATCAACACATTTCATCTGAGTCTAATTGGAGGAATGGGGGTAGCAGCATTATCAAGCCTAAGCTGGTGAATATATTACCAAAACCTTATAGTAATAGAAGCAACATGGAAACACATAGTGGAGAAAATGATGCGTTGCGAATGCTAAGTCAAACTCGCCTTATTTCTTCGTTATCCTCGAATGAATTACAAAGATATGGTCCCTACAGGCCTCCTGGAGAATTTCAAATGCTTAACAATTTTGCACATCTTCACCCACCAAATTTTCATTTTCCAAGTAGAGGCCATATAGGAAGTGATCTTTCATTATCAATGAGTGATCAACAACAACAACAACAACAACAACAGTGGCAATCAGGGCCTCCAACACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAAATCATAAGACCCTCTTCTCAAGGTTGGGTGCAGAAAAATGGGTTCCACAATCTCATGAGACCCTCTTCATGA 1584 0.4148 MWDLNDSPDQRIKVGEEESEEGCSSFKTSMDFDDDNNNKGKGVGSVSNSSSSAVVIEDGSEEEEEEQEDEKMKKSSKIFGFSVTHEGDDSMDNNENNNLPQLVMTTRQFFPVEETDVATASGGGGGGGISSFPRAHWVGVKFCQSEPLGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDKELNSESTGTTNTSDHNLDLSLGNSSSKLSNHIPNTSTHDQHISSESNWRNGGSSIIKPKLVNILPKPYSNRSNMETHSGENDALRMLSQTRLISSLSSNELQRYGPYRPPGEFQMLNNFAHLHPPNFHFPSRGHIGSDLSLSMSDQQQQQQQQQWQSGPPTHYLATAAASSGFPPQIIRPSSQGWVQKNGFHNLMRPSS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1374 527 MobiDBLite consensus disorder prediction 457 487 - -
Lal16g1374 527 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Lal16g1374 527 MobiDBLite consensus disorder prediction 40 56 - -
Lal16g1374 527 MobiDBLite consensus disorder prediction 9 38 - -
Lal16g1374 527 Pfam AP2 domain 173 221 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 Pfam AP2 domain 264 313 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 524 - -
Lal16g1374 527 ProSiteProfiles AP2/ERF domain profile. 173 229 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 SUPERFAMILY DNA-binding domain 264 324 IPR016177 GO:0003677
Lal16g1374 527 MobiDBLite consensus disorder prediction 1 77 - -
Lal16g1374 527 Gene3D AP2/ERF domain 172 231 IPR036955 GO:0003700|GO:0006355
Lal16g1374 527 Gene3D AP2/ERF domain 264 323 IPR036955 GO:0003700|GO:0006355
Lal16g1374 527 CDD AP2 264 324 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 ProSiteProfiles AP2/ERF domain profile. 265 322 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 MobiDBLite consensus disorder prediction 465 487 - -
Lal16g1374 527 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 524 - -
Lal16g1374 527 SMART rav1_2 265 328 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 SMART rav1_2 173 235 IPR001471 GO:0003700|GO:0006355
Lal16g1374 527 MobiDBLite consensus disorder prediction 151 173 - -
Lal16g1374 527 CDD AP2 173 230 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1374 Lal-Chr16 10191039 10195034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1374 1 354 AP2-EREBP Transcription Factor Family AT4G36920 66.940 3.52e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal16g1374 AP2 9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1374 K09284 - gmx:100792442 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1374 16 10191039 10195034 Lal16g1374 16 10191039 10195034 ECH
Lal15g1247 15 13984755 13990074 Lal16g1374 16 10191039 10195034 LSH
Lal16g0226 16 1353067 1357016 Lal16g1374 16 10191039 10195034 PCT
Lal15g1247 15 13984755 13990074 Lal16g1374 16 10191039 10195034 PCT
Lal23g1323 23 14095655 14102235 Lal16g1374 16 10191039 10195034 PCT
Lal16g1374 16 10191039 10195034 Lal16g0226 16 1353067 1357016 PCT
Lal16g1374 16 10191039 10195034 Lal15g1247 15 13984755 13990074 PCT
Lal16g1374 16 10191039 10195034 Lal23g1323 23 14095655 14102235 PCT