LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g1361	ATGGCCGTTGATTTCATGATGACTGGTTTCAACACTTTCACTTCCAAAACCGAAGAACATGCGGTTCAAGAAGCTGCTTCCGGTTTAGAAAGTGTTGAAAAACTCATTCACTTACTCTCTCATACACAACAACAATTTCACTCTTCTTCTTCTTCTTCTTCGAATCTAAACCCAAACCTTGAAATAATTGATATAGATTATAAAGCTGTAGCAGACGTCGCCGTTTCGAAGTTTAGAAAAGTCATTTCTCTCTTGGGTCGAACCCGAACCGGTCATGCCCGGTTCAGAAGAGCCCCTTTGGTTCAAACTCAAAAAGAAGAAGAACAACATGTTTCTCGAACTAAACCTTCTAGAATCTTCCATGCTACTCCGTTGCAGCAGATCCCACCTACCACTATCATTCATAATCATCACTCTTCGATCTCAAGAAATGGAATCACTGACAAAAATGATTCATCGTCGAAAATCATTACTTTCTCTTCTTATAATAATACTGATTCCTCTGCTCCAAATTCGTTCATCTCGTCTTTAACCGGTGACGTTGACACTAAGCAACAACCGTCTCCATCTGCACCGGCGACGGTGCCGGTAGCGTTTCAGATCACGAATCTTTCTCAGGTTTCTTCGGCGGGGAAACCTCCGCTTCCATCTTCTTCGTTGAAGAGGAAGTGTAGTTCTGAGACTTTGGGTTCTGGAAAGTGTGGTAGTTCCTCTAGCCGCTGTCATTGTTCAAAAAAGAGCAGAAAAATGAGGGTGAAAAGGGTGATGAGAGTGCCAGCTATAAGTTTAAAATTGGCTGATATTCCACCAGATGATTATTCTTGGAGGAAATATGGACAAAAACCTATTAAAGGTTCCCCTCATCCAAGAGGTTACTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCAAGAAAACATGTAGAAAGAGCTTTGGATGATTCATCTATGCTTGTAGTTACATATGAAGGAGAGCACAACCATGCTTTCTCTGCAGTTGATGCTACTAATCTCATTCTAGAATCCTCTTAA	1029	0.4159	MAVDFMMTGFNTFTSKTEEHAVQEAASGLESVEKLIHLLSHTQQQFHSSSSSSSNLNPNLEIIDIDYKAVADVAVSKFRKVISLLGRTRTGHARFRRAPLVQTQKEEEQHVSRTKPSRIFHATPLQQIPPTTIIHNHHSSISRNGITDKNDSSSKIITFSSYNNTDSSAPNSFISSLTGDVDTKQQPSPSAPATVPVAFQITNLSQVSSAGKPPLPSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSRKMRVKRVMRVPAISLKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDSSMLVVTYEGEHNHAFSAVDATNLILESS	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g1361	342	ProSiteProfiles	WRKY domain profile.	264	330	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1361	342	Pfam	Plant zinc cluster domain	221	267	IPR018872	-
	Lal16g1361	342	Pfam	WRKY DNA -binding domain	271	327	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1361	342	Gene3D	WRKY domain	260	329	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1361	342	MobiDBLite	consensus disorder prediction	207	231	-	-
	Lal16g1361	342	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	14	342	IPR044810	GO:0003700
	Lal16g1361	342	PANTHER	WRKY TRANSCRIPTION FACTOR 7-RELATED	14	342	-	-
	Lal16g1361	342	SUPERFAMILY	WRKY DNA-binding domain	267	329	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lal16g1361	342	SMART	WRKY_cls	269	329	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g1361	Lal-Chr16	9968075	9970193	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g1361	1	327	WRKY Transcription Factor Family	AT2G24570	41.399	1.38e-72	226

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lal16g1361		WRKY	9e-26	CL0274