Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1341 ATGACATTGCCACACAAAAAAATTCTTGAAGCTGACGTTCATAAAATACGAATTCCAATAATATTAAGTTTCATTAACAAGCACCACTTCACACTTCATTTTCTCTCACTATCACACCCTCATCTGAATCCAAATTCCACCATGTCTCATCATCAACCACTCTTAAACTCACCCCAACATGAACAAGATGAACTCGAAGAAACAGCCTACGACGACTCCGAAAAAGTTATCATAGTCGAAGATGATGATGAATTCGATGATGATGATAAGTGGGGTCGGACTCCACCATTCTCATGGAAGAAGCTGTGGCTCTTTATGGGCCCCGGCTTCCTCATGAGTATAGCGTTCCTCGATCCAGGGAACCTTGAGGGTGACCTGCAAGCGGGTGCCATAGCAGGATATTCTCTGCTATGGCTCCTCGTAACGGCCACCCTCATGGGACTGTTGATCAGCCTTTTGTCTGCCCGGCTAGGTGTCACCACCGGGCGACACCTGGCCGAGCTTTGTAGGGACGAATATCCCACGTGGGCTAGGTTGGTGCTGTGGGTTATGGCTGAGATTGCTCTTATTGGTTCTGATATTCAAGAGGTTATAGGGAGTGCTATTGCTATCAGAATTCTTACTAATGGGGCTGTGCCACTTTGGTCTGGGGTTATTATTACAGCTTCTGATTGTTTTGTTTTTCTCTTTCTTGAGAACTATGGTGTGAGAAAATTGGAAGCTGTTTTTGCTATCCTCATTGGTATCATGGCAATTTCATTTGCATGGATGTTTGGCGAAGCAAAGCCCAACGGCAAGGAACTTCTTCTCGGTATTTTTGTTCCGAAACTTAGTTCCAAAACTATACACCAGGCTGTTGGAGTTGTAGGCTGCGTTATTATGCCGCACAATGTATTCTTGCATTCTGCTCTTGTACAATCAAGGCACATCGACCGCAGCAAGAAAGGACGAGTTCAAGAAGCTATTAATTATTATACTATAGAGGCCACCATTGCCCTTTTAGTTTCATTGGTCATTAATATATTTGTCACAACTGTGTTTGCTAATGGGTTTTACGGCACCGACCTAGCACAGAATATTGGTCTCGTAAACGCAGGACAGTACCTCGAGGAGAAGTATGGTGGAGGACTGCTTCCGATATTGTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAAAGTAGCACTCTTACTGGTACTTATGCTGGACAATTTATCATGGGAGGTTTTCTAAATTTAAAGTTGAAAAAATGGCTGAGGGCATTAATAACAAGAAGTTGTTCAATCCTCCCAACCATGATAATCGCCCTTACGTTTGATACCTCTGATGACGCATTAGACGTTCTTAATGATTGGCTTAATGTTCTTCTGTCAGTCCAAATCCCGTTTGCGCTTATTCCGTTGCTTTGTTTGGTGTCAAAGGAACAGATCATGGGAACTTTCAAGATCGGCCCTGTCCTCAAGATTATTTCATGGCTTGTGGCTGTTCTGTTGATAGTGATCAATGGCTATCTTTTGGTGGAATTCTTCTCTGCTGAAGTGAATGGAGCAGTAGTTGCCACCATACTATGTGTAGTAACAGTTGCATATGTTTCATTCATAATATACCTTGCATCCAGAGCCATTACATTTTCAGCTTGGAAAAGTGTACCGCAAGAGAAGACAAGTGTAACAGAAACAACTGAATCATAA 1692 0.4279 MTLPHKKILEADVHKIRIPIILSFINKHHFTLHFLSLSHPHLNPNSTMSHHQPLLNSPQHEQDELEETAYDDSEKVIIVEDDDEFDDDDKWGRTPPFSWKKLWLFMGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLVTATLMGLLISLLSARLGVTTGRHLAELCRDEYPTWARLVLWVMAEIALIGSDIQEVIGSAIAIRILTNGAVPLWSGVIITASDCFVFLFLENYGVRKLEAVFAILIGIMAISFAWMFGEAKPNGKELLLGIFVPKLSSKTIHQAVGVVGCVIMPHNVFLHSALVQSRHIDRSKKGRVQEAINYYTIEATIALLVSLVINIFVTTVFANGFYGTDLAQNIGLVNAGQYLEEKYGGGLLPILYIWGIGLLAAGQSSTLTGTYAGQFIMGGFLNLKLKKWLRALITRSCSILPTMIIALTFDTSDDALDVLNDWLNVLLSVQIPFALIPLLCLVSKEQIMGTFKIGPVLKIISWLVAVLLIVINGYLLVEFFSAEVNGAVVATILCVVTVAYVSFIIYLASRAITFSAWKSVPQEKTSVTETTES 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1341 563 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 60 558 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 100 478 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 MobiDBLite consensus disorder prediction 47 67 - -
Lal16g1341 563 Hamap Divalent metal cation transporter MntH [mntH]. 86 510 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 Pfam Natural resistance-associated macrophage protein 123 484 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PRINTS Natural resistance-associated macrophage protein signature 181 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PRINTS Natural resistance-associated macrophage protein signature 211 230 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PRINTS Natural resistance-associated macrophage protein signature 236 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PRINTS Natural resistance-associated macrophage protein signature 285 308 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PRINTS Natural resistance-associated macrophage protein signature 392 411 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PRINTS Natural resistance-associated macrophage protein signature 420 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PRINTS Natural resistance-associated macrophage protein signature 454 473 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal16g1341 563 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 60 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1341 Lal-Chr16 9714393 9718737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1341 80 547 Inorganic Solute Cotransporters AT2G23150 76.496 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1341 K21398 - gmx:547711 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1341 16 9714393 9718737 Lal16g1341 16 9714393 9718737 ECH
Lal15g1284 15 14591005 14595246 Lal16g1341 16 9714393 9718737 LSH
Lal15g1284 15 14591005 14595246 Lal16g1341 16 9714393 9718737 PCT
Lal16g1341 16 9714393 9718737 Lal15g1284 15 14591005 14595246 PCT