Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1332 ATGTGTAGTAATAATAATCTTTTCACACTTTTTAAATATGCGCACGAGCCACCAGCATTACTCCGCATTTTGCTAGTGTGCACCCTTATTACCTTGCGTGCGCCGGTTGTGCAATCTCCTATCCTGCGCATCAACGATAACACTATTCACCACCGCACCAAAACTAACCGCCACCGCGTCCAGATCTCGGGTTCGATTCGCCGAACCATGTCGAAGGCGCGTGTCTACACCGATATCAATGTTCTTCGTCCCAAAGAGTATTGGGACTACGAATCTCTCACCGTTCAATGGGGTAATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGGAGGCATAAATGTTAATAGCAACGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATGAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTCAAAGTTTTGTATCCAACCTTGACTGATTACGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCACAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAGTATAATGTTCGTGTGGCTTCTAGATACTTTAAGGGCCCCGAACTTCTAGTTGATTTGGAAGATTATGATTACTCTTTAGATATATGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCGCGACAACCAGGATCAACTTGTCAAAATAGCTAAGGTGCTTGGGACCGATGAGCTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCATCTTGACGCACAAGTAGGAAGGCATAGTCGCAAGCCCTGGTCTAAATTTATTAATGCAGATAATCAGCATCTTGTTTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACTGCACAAGAAGCAATGGCACATCCTTACTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACATAG 1206 0.4163 MCSNNNLFTLFKYAHEPPALLRILLVCTLITLRAPVVQSPILRINDNTIHHRTKTNRHRVQISGSIRRTMSKARVYTDINVLRPKEYWDYESLTVQWGNQDDYEVVRKVGRGKYSEVFGGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDEHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLEDYDYSLDIWSLGCMFAGMIFRKEPFFYGRDNQDQLVKIAKVLGTDELNAYLNKYHLELDPHLDAQVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAQEAMAHPYFSQVRAAESSRMRT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1332 401 SMART serkin_6 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1332 401 Gene3D Transferase(Phosphotransferase) domain 1 180 388 - -
Lal16g1332 401 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Lal16g1332 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Lal16g1332 401 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 19 401 - -
Lal16g1332 401 Pfam Protein kinase domain 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1332 401 PANTHER CASEIN KINASE II SUBUNIT ALPHA 19 401 IPR045216 GO:0004674|GO:0006468
Lal16g1332 401 SUPERFAMILY Protein kinase-like (PK-like) 74 392 IPR011009 -
Lal16g1332 401 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1332 401 CDD STKc_CK2_alpha 84 388 IPR045216 GO:0004674|GO:0006468
Lal16g1332 401 Gene3D Phosphorylase Kinase; domain 1 103 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1332 Lal-Chr16 9621159 9629181 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1332 101 391 Core Cell Cycle Gene Families AT3G48750 32.686 1.71e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lal16g1332 Pkinase 7.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1332 K03097 - gmx:100819679 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1332 16 9621159 9629181 Lal16g1332 16 9621159 9629181 ECH
Lal15g1295 15 14759223 14766338 Lal16g1332 16 9621159 9629181 LSH
Lal16g0244 16 1451094 1455330 Lal16g1332 16 9621159 9629181 PCT
Lal15g1295 15 14759223 14766338 Lal16g1332 16 9621159 9629181 PCT
Lal23g1302 23 13995192 13999581 Lal16g1332 16 9621159 9629181 PCT
Lal16g1332 16 9621159 9629181 Lal16g0244 16 1451094 1455330 PCT
Lal16g1332 16 9621159 9629181 Lal15g1295 15 14759223 14766338 PCT
Lal16g1332 16 9621159 9629181 Lal23g1302 23 13995192 13999581 PCT