Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1328 ATGAGTTGCAACGGGTGCCGAGTTCTTAGGAAGGGTTGCAGCGAGTCATGTATCTTACGCCCTTGTTTGCAATGGATCGAAACCCCTGAGGCACAAGGCCACGCTACTGTTTTCGTAGCTAAATTTTTCGGCCGTGCTGGTCTCATGTCTTTTATTTCCAACGTTCCTGAAACCCAAAGACCTGCTCTGTTTCGGTCGCTGTTGTTTGAAGCGTGTGGTAGAACTGTGAACCCTGTTAATGGTGCTGTGGGGCTTTTGTGGACCGGGAACTGGCACGTGTGCCAGGCGGCGGTGGAGACGGTGCTACGTGGCGGAACGCTGACGCCTATGGCAGAGGTTATTGGTATGGACGCGCTTGCTCCGGCGATGGATGAAGCTTCTGAATCGGAAGTTACCTGTACGGACATTTCTAGGATCCGAGATCCGAACCCGAATTACCGGTTCATGAGCTCTCGATCCAACGTCGCTTGCGGCGGCGCCGGTGGAAAACGGAAACGACCGGAGGCTGCGGCGGCTGATCTTGATCTCCGACTTACGCCGATTTTTATGCAGAAGGTTTCGGATTATTGGTCCCGGCTGGAAGACCGCCGACAGGGATCGCCGTCGATGACGTCGGAGGAATCTGTCACGACGGTTGGTTGCTTGGAAAGTGGCACTCACGGCGGAGATCGGAAAGTTCTCAACCTTTTCATTTGA 696 0.5417 MSCNGCRVLRKGCSESCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPETQRPALFRSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLTPMAEVIGMDALAPAMDEASESEVTCTDISRIRDPNPNYRFMSSRSNVACGGAGGKRKRPEAAAADLDLRLTPIFMQKVSDYWSRLEDRRQGSPSMTSEESVTTVGCLESGTHGGDRKVLNLFI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1328 231 MobiDBLite consensus disorder prediction 196 219 - -
Lal16g1328 231 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lal16g1328 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 231 - -
Lal16g1328 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 231 - -
Lal16g1328 231 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1328 Lal-Chr16 9536038 9537466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1328 1 231 AS2 family AT4G37540 57.028 6.08e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal16g1328 LOB 5.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1328 - - gmx:100816189 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0190 15 1309593 1310825 Lal16g1328 16 9536038 9537466 ECH
Lal16g1328 16 9536038 9537466 Lal16g1328 16 9536038 9537466 ECH
Lal15g1307 15 14926512 14927791 Lal16g1328 16 9536038 9537466 LSH
Lal16g1328 16 9536038 9537466 Lal16g0250 16 1490570 1491949 PCT
Lal16g1328 16 9536038 9537466 Lal15g1307 15 14926512 14927791 PCT