LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g1327	ATGCATGATGAAAAATTAATTATTTTTAATATTCATGATTGTCTCTTCCGCGTTTCTCAATCTCTTTCATTTCCCTCTTCTCCATTCCGCTCTTCCAATTTACCCAAACCTTTCCTCCGCCGCCGTACCCCTACGACATCCACCGCCGATTTCGGCCTCCGCCGCCACCACCCGACACCCTGGCGCAGAAGATTGGGAAATCCACTCGCCGCCCCGGCGCTCCCTCCAAGGCGAGGGTTTATTCCGATGTCAATGTTGTTCGCCCTAAGGAATATTCGGACTATGAAAACCTCACCGTTCAGTGGGGGGAAAGGATCGGGAGTCGTGAAATATTATTGTGAAATCAGAGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGAAGGGGAAAATACAGTGAGGTGTTTGAGGGTTTTCACTGCACTGATAATGAAAAATGTGTCATCAAGATCCTGAAACCTGTCAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTGCAGAACCTTTGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATCGTTAGAGATCAGCAGTCGAAGACCCCAAGCCTTATATTTGAATATGTTAATAACACTGATTTTAAAGTGCTATATCCTACGTTATCAGACTATGATATACGATATTATATTCATGAACTTCTAAAGGCAAGAAGGCTTACATTACAAATAGTGCTTGCAAAAGACAATGCAGCTGCATATGCACTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTAATGATTGATCATGAGCAACGTAAGCTTCGCCTTATAGATTGGGGTCTTGCTGAGTTCTATCATCCAGGGAAAGAATATAATGTTCGCGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCACTAGATTTATGGAGTCTGGGTTGTATGTTCGCTGGGATGATATTCCGCAAGGAGCCATTCTTCTATGGGCATGATAATTATGATCAACTGGTCAAAATAGCTAAGGAATGCCTTTCATCTGTTTCCAACCTTTTGCATTATTTTTGTGGTGCTGATCTTGGAGAACAATCTGCTTCTTTGTTTATTATTTTTTCAATAATTGTTCATGCCTGCAAAGTCAATATGAATTCTCCTGAAGTAAATTTAGGGATGCAAAGGATGTTTTATCTGTTCTTTGATATGGTTCTTGGAACAGATGAATTAAGTGCATATCTGAATAAATACCGCATAGAGTTGGACCCAAATCTTGCAGCACTTATTGGAAGGCATAGCCGGAAGCCATGGGCAAAGTTCATTAATGGAGAAAATCAACACTTGGCTGTTCCTGAGGCCATTGACTTTGTTGACAAGCTACTACGGTATGATCACCAAGAACGACCAACTGCAAAAGAAGCAATGGCCCATCCTTATTTCAATCCAGTCAGAAATACAGAAAGTAGCAGAACTCGGACACATTGA	1494	0.415	MHDEKLIIFNIHDCLFRVSQSLSFPSSPFRSSNLPKPFLRRRTPTTSTADFGLRRHHPTPWRRRLGNPLAAPALPPRRGFIPMSMLFALRNIRTMKTSPFSGGKGSGVVKYYCEIREQDDYEVVRKVGRGKYSEVFEGFHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIHELLKARRLTLQIVLAKDNAAAYALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKECLSSVSNLLHYFCGADLGEQSASLFIIFSIIVHACKVNMNSPEVNLGMQRMFYLFFDMVLGTDELSAYLNKYRIELDPNLAALIGRHSRKPWAKFINGENQHLAVPEAIDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNTESSRTRTH	497

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal16g1327	497	Pfam	Protein kinase domain	121	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal16g1327	497	Gene3D	Phosphorylase Kinase; domain 1	109	197	-	-
Lal16g1327	497	SUPERFAMILY	Protein kinase-like (PK-like)	106	487	IPR011009	-
Lal16g1327	497	SMART	serkin_6	121	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal16g1327	497	MobiDBLite	consensus disorder prediction	35	52	-	-
Lal16g1327	497	MobiDBLite	consensus disorder prediction	477	497	-	-
Lal16g1327	497	ProSiteProfiles	Protein kinase domain profile.	121	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal16g1327	497	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	252	264	IPR008271	GO:0004672\|GO:0006468
Lal16g1327	497	ProSitePatterns	Protein kinases ATP-binding region signature.	127	150	IPR017441	GO:0005524
Lal16g1327	497	MobiDBLite	consensus disorder prediction	35	68	-	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g1327	Lal-Chr16	9474103	9480985	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g1327	119	345	Core Cell Cycle Gene Families	AT3G48750	32.353	2.16e-29	115

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CK2	Lal16g1327		Pkinase	5.7e-56	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g1327	K03097		-	han:110903987	509.99

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal16g1327	16	9474103	9480985	Lal16g1327	16	9474103	9480985	ECH
Lal15g1309	15	14982599	14988266	Lal16g1327	16	9474103	9480985	LSH
Lal16g1327	16	9474103	9480985	Lal23g0131	23	1286877	1292720	LSH

Showing 1 to 3 of 3 entries

Previous1Next