Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1323 ATGGAGAGTTATTTAAATGAGAATTTTGGAGGGGTGAAGTGCAAGAACACTTCTGAAGAGTCTCTTGATAAATGGAGGAAACTTTGTGGGGTCGTAAAGAACCCCACAAGACGCTTTCGTTTTACTGCCAATCTCTCCAAACGTGGTGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTCATCCAAGGCATGTTTCTATGTGTGCAACCAAGTGATTACACTGTACCTGAGGAAGTTAAAGCTGCAGGTTTTCAAATCTGTGCTGATGAATTAGGATCAATCGTTGAAGGCCACGACGTAAAGAAGCTGAAATTTCATGGTGGAGTTAGTGGTATTGCAGAAAAGCTTTCAACATCTACCACTACTGGGCTTAGCAATGATGCTGATTCGCGATATCGGAGACAAGAGCTTTATGGGGTCAACAAGTTTACTGAAAGTGAAGTAAGGAGCTTTTGGATATTTGTTTATGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGAGTGTGTGCTTTAGTGTCTCTTTTAGTTGGCATAGCAACTGAAGGATGGCCTAAGGGTGCTCATGATGGACTTGGAATTGTTGCAAGTATCTTACTTGTTGTCTTTGTGACAGCAACAAGCGATTATCGGCAATCGTTACAATTCAAGGATTTAGACAAAGAGAAGAAAAAGATTTCAATGCAGGTTACAAGAAATGGTTATAGGCAGAAAATGTCAATATATAATTTACTGCCTGGAGATCTTGTGCATCTTGCCATTGGAGACCAAGTCCCTGCAGATGGACTATTTGTTTCTGGATTTTCCGTGTTGATTGACGAATCGAGTTTAACCGGAGAGAGCGAGCCAGTGATGGTGACTTCTCAAAATCCATATCTTCTTTCTGGAACCAAGGTCCAAGATGGATCATGCACCATGTTGGTTACCACCGTTGGGATGAGGACTCAATGGGGTAAATTGATGGCAACTCTAAGTGAAGGTGGAGATGATGAAACCCCATTGCAGGTGAAACTTAATGGAGTTGCAACCATTATTGGGAAGATAGGCCTATTTTTCGCGGTGGTTACTTTTGCAGTTTTGGTGAAAGGACTCATGGGCCGCAAAATCAGAGAAGGAAGGTTCTGGTGGTGGTCCGCGGATGATGCCATTGAGATGTTGGAATTCTTTGCTATTGCAGTTACCATAGTTGTTGTAGCTGTTCCAGAGGGGTTACCCTTAGCTGTGACATTGAGCCTTGCTTTTGCAATGAAGAAAATGATGAATGACAAAGCCCTTGTTAGACATTTGGCAGCTTGTGAGACTATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACGAATCGTATGACGGTTGTTAAAACATGCATCTGTATGCATATCAAGGATATGAATGATAAGGATTCTAGTTTGAGTACTGAACTCCCAGATTCTGCTTTGAAACTGTTGTTACAATCAATATTTAATAACACTGGAGGAGAGGTTGTGGTTAACAAAAAAGGTAGGCGCGAGATTTTGGGGACACCGACGGAGTCAGCAATATTGGAGTTTGGCTTATCACTAGGTGGAGATTTTAAGGCAGAGAGAGAAGCATGTAAACTTATCAAAGTTGAGCCATTCAACTCAGAGAAGAAAAGAATGGGAGTGGTTTTGGAGCTCCCTGAAGGAGGAGGTTTAAGAGCACATTGTAAAGGTGCTTCTGAAATTATTCTAGCTGCATGTGACAAGGTGGTCAATTCAAATGGCGAGGTTGTTCCTCTTGATGAAGAATCAAGCAATCTTCTAAAGAGTACAATCAACGAGTTCGCTTGTGAGGCACTAAGAACTCTTTGCCTTGCCTATATAGAATTGGAAAACGGGTTCTCTTCGGAAGACCCTATTCCTATTTCTGGTTATACTTGTATAGGAGTTGTTGGTATCAAAGATCCGGTTCGTCCTGGTGTTAAAGAATCTGTTGCAGTGTGTCGCTCGGCTGGAATTATGGTAAGGATGGTTACAGGTGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGAATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGATTTTAGAGAGAAAACTCAGGAAGAAATGTTTGAACTCATTCCCAAAATTCAGGTTATGGCTCGATCGTCACCTTTAGACAAGCATACATTGGTTAAACAATTGCGTACCACGTTTGGAGAAGTTGTTGCTGTAACTGGTGATGGAACAAATGACGCTCCGGCTCTTCATGAAGCCGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAATTTCTCCACAATAGTGACAGTGTGCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTTGTTCAGTTTCAGTTAACTGTTAATGTTGTTGCATTACTAGTGAACTTCTCATCAGCCTGCATGACAGGAAGTGCACCCCTCACAGCAGTTCAACTTTTGTGGGTGAACATGATAATGGACACTCTAGGAGCACTTGCACTGGCAACAGAACCTCCGAACGACGATTTAATGAAGCGCGCACCGGTCGGGAGAAAGGGAAATTTCATCAGCAATGTAATGTGGAGGAATATCTTAGGACAATCATTGTACCAGTTTGTAGTGATATGGTTTCTTCAGTCAGTAGGAAGATGGGTCTTTTTTCTCAGAGGGACAAAGGCTGATATAACCTTAAACACACTAATTTTCAACTCATTTGTTCTCTGTCAGGTTTTCAATGAGATAAACTCTCGTGAGATGGAAGAAGTAGATGTTTTCAAGGGCATAATGGAGAATCATGTGTTTGTTGCAGTCATCAGTTGCACTGTTGTGTTTCAAATCATAATAGTTGAATACTTAGGAACATTTGCAAACACAACACCTCTCTCTCTGGTACAATGGCTCTTTTGCTTATTGGTTGGGTTTATGGGTATGCCTATTGCAGCTCGCTTAAAACAAATCCCTGTTTGA 3060 0.4167 MESYLNENFGGVKCKNTSEESLDKWRKLCGVVKNPTRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGMFLCVQPSDYTVPEEVKAAGFQICADELGSIVEGHDVKKLKFHGGVSGIAEKLSTSTTTGLSNDADSRYRRQELYGVNKFTESEVRSFWIFVYEALQDMTLMILGVCALVSLLVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISMQVTRNGYRQKMSIYNLLPGDLVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPYLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMGRKIREGRFWWWSADDAIEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMHIKDMNDKDSSLSTELPDSALKLLLQSIFNNTGGEVVVNKKGRREILGTPTESAILEFGLSLGGDFKAEREACKLIKVEPFNSEKKRMGVVLELPEGGGLRAHCKGASEIILAACDKVVNSNGEVVPLDEESSNLLKSTINEFACEALRTLCLAYIELENGFSSEDPIPISGYTCIGVVGIKDPVRPGVKESVAVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVCKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRAPVGRKGNFISNVMWRNILGQSLYQFVVIWFLQSVGRWVFFLRGTKADITLNTLIFNSFVLCQVFNEINSREMEEVDVFKGIMENHVFVAVISCTVVFQIIIVEYLGTFANTTPLSLVQWLFCLLVGFMGMPIAARLKQIPV 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1323 1019 CDD P-type_ATPase_Ca_PMCA-like 148 891 - -
Lal16g1323 1019 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 463 667 IPR023299 GO:0000166
Lal16g1323 1019 SFLD p-type atpase 439 810 IPR044492 -
Lal16g1323 1019 PANTHER CALCIUM-TRANSPORTING ATPASE 2 1018 - -
Lal16g1323 1019 Gene3D - 172 1008 - -
Lal16g1323 1019 Pfam Cation transporter/ATPase, N-terminus 121 189 IPR004014 -
Lal16g1323 1019 PRINTS P-type cation-transporting ATPase superfamily signature 288 302 - -
Lal16g1323 1019 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Lal16g1323 1019 PRINTS P-type cation-transporting ATPase superfamily signature 655 666 - -
Lal16g1323 1019 PRINTS P-type cation-transporting ATPase superfamily signature 677 687 - -
Lal16g1323 1019 PRINTS P-type cation-transporting ATPase superfamily signature 758 777 - -
Lal16g1323 1019 PRINTS P-type cation-transporting ATPase superfamily signature 782 794 - -
Lal16g1323 1019 SUPERFAMILY Calcium ATPase, transmembrane domain M 121 1018 IPR023298 -
Lal16g1323 1019 SFLD Haloacid Dehalogenase 439 810 - -
Lal16g1323 1019 PANTHER CATION TRANSPORTING ATPASE 2 1018 - -
Lal16g1323 1019 Pfam E1-E2 ATPase 240 435 - -
Lal16g1323 1019 Pfam Cation transport ATPase (P-type) 517 596 - -
Lal16g1323 1019 Gene3D - 138 340 - -
Lal16g1323 1019 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Lal16g1323 1019 Gene3D - 467 662 IPR023299 GO:0000166
Lal16g1323 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 390 481 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g1323 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 728 842 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g1323 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 550 703 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g1323 1019 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 114 1019 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lal16g1323 1019 Pfam Cation transporting ATPase, C-terminus 843 1015 IPR006068 -
Lal16g1323 1019 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
Lal16g1323 1019 SUPERFAMILY Calcium ATPase, transduction domain A 243 337 IPR008250 -
Lal16g1323 1019 SUPERFAMILY HAD-like 455 863 IPR036412 -
Lal16g1323 1019 Gene3D - 17 77 - -
Lal16g1323 1019 Gene3D - 454 803 IPR023214 -
Lal16g1323 1019 PRINTS H+-transporting ATPase (proton pump) signature 614 632 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g1323 1019 PRINTS H+-transporting ATPase (proton pump) signature 758 774 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal16g1323 1019 PRINTS H+-transporting ATPase (proton pump) signature 790 815 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1323 Lal-Chr16 9390232 9396511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1323 1 1019 Primary Pumps ATPases AT4G37640 81.452 0.0 1707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1323 K01537 - gmx:100776926 1808.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1323 16 9390232 9396511 Lal16g1323 16 9390232 9396511 ECH
Lal16g0256 16 1532569 1541867 Lal16g1323 16 9390232 9396511 PCT
Lal16g1323 16 9390232 9396511 Lal16g0256 16 1532569 1541867 PCT