Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1317 ATGATACATGATGATTGTGAATTTGTGATGATAGAAGAGGGAAGCATTGAACTTAGAAGCTTTCCTCTAGAAGCAGAAATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCACTGAAAGCTGGAGTAGTGAAACATGGAGCAGGAAAATGGCGCACTATACTTATGGACCCAGAATTCAGTGGCATTTTGCACTTGCGTTCAAATGTCGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAGGTTGCCAGCTCCCAAAATTGACAATAACCATTTGGCCGTGACTACAGTTCAACATGATGAAGATGTTCTTGACACTCAGCCTCTGGCAGTTTTTGGTGCAGCATTGCAATCTGCTAATTCGAAAGAACAAAAATCAAGGTTGAGTAATCGTATATTAGAGGCCATTGTCCATTTGAAGGAGCCAAATGGTTCTGACAAGGTTGCTATTGCTTCTTACATAGAGGACAAGTACCAGTCTCAATCAAAGCTCAGGGACATACTGCCAACAAAACTGAAGCATATGGTGGCAACTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGCTTGCTCCAAGTTCAAGAACCTATGAGAAAAGAAGAATCTCTTCTGCATCAAACCTGGATGAGAGGGCCAAAGATTTTCCAGAAGCAGAGAAATGTGATGATAACATCTGTTCAAAACCCAAAGATTTTCTAGCAGCAGGGAAGTGTGATGATAAAATCATCCATTCAAAATCCCAAAATGACGGAGAACCATCAAAAACAAAGGAAATGAGGGTTCGAGAGGCGGCTGCTAAGGCTGCAAAAGCAGTTGCTGAGGCAGAAGCTGCCACTGCTGAGGCTGAGAGAGCTGCTAGGTTTGCAGATGAACTAGAAGCTGAAGCTGAGGCTTCTGAAGTGATTCACCAAGCAATAATGAAGGCGTTCCAAAGCAAAACATTTCGTCTTTGGTAG 1014 0.428 MIHDDCEFVMIEEGSIELRSFPLEAEMGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSGILHLRSNVDLKDKWRNINVTAIWGSRQKAKLALKRLPAPKIDNNHLAVTTVQHDEDVLDTQPLAVFGAALQSANSKEQKSRLSNRILEAIVHLKEPNGSDKVAIASYIEDKYQSQSKLRDILPTKLKHMVATGKIIKEKHKYRLAPSSRTYEKRRISSASNLDERAKDFPEAEKCDDNICSKPKDFLAAGKCDDKIIHSKSQNDGEPSKTKEMRVREAAAKAAKAVAEAEAATAEAERAARFADELEAEAEASEVIHQAIMKAFQSKTFRLW 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1317 337 PANTHER SINGLE MYB HISTONE 4 27 247 IPR044597 GO:0003691
Lal16g1317 337 PANTHER SINGLE MYB HISTONE 4 246 333 IPR044597 GO:0003691
Lal16g1317 337 SMART sant 30 85 IPR001005 -
Lal16g1317 337 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 143 211 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal16g1317 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 87 IPR017930 -
Lal16g1317 337 Coils Coil 280 314 - -
Lal16g1317 337 PANTHER MYB TRANSCRIPTION FACTOR 27 247 - -
Lal16g1317 337 PANTHER MYB TRANSCRIPTION FACTOR 246 333 - -
Lal16g1317 337 Pfam linker histone H1 and H5 family 148 204 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal16g1317 337 SUPERFAMILY Homeodomain-like 28 88 IPR009057 -
Lal16g1317 337 SUPERFAMILY "Winged helix" DNA-binding domain 144 220 IPR036390 -
Lal16g1317 337 Gene3D - 139 222 IPR036388 -
Lal16g1317 337 SMART h15plus2 141 206 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal16g1317 337 CDD SANT_TRF 32 83 - -
Lal16g1317 337 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Lal16g1317 337 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Lal16g1317 337 Gene3D - 26 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1317 Lal-Chr16 9341790 9357133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1317 27 268 Single Myb Histone (SMH) Gene Family AT1G49950 45.783 1.72e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal16g1317 Linker_histone 4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1317 K09422 - gmx:778043 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0197 15 1354152 1359289 Lal16g1317 16 9341790 9357133 PCT
Lal23g1289 23 13922830 13928280 Lal16g1317 16 9341790 9357133 PCT
Lal16g1317 16 9341790 9357133 Lal15g0197 15 1354152 1359289 PCT
Lal16g1317 16 9341790 9357133 Lal23g1289 23 13922830 13928280 PCT