Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1282 ATGTCATCCTCTTCAACTACATTATCACTGGACCACCTCCCTCATTCTGAACAGCTTTGTTATGTTCATTGCAACATATGTGACACTGTCCTTGCTGTAAGTGTTCCATGTACAAGCTTGTTCAAGACCGTGACTGTGCGATGCGGTCATTGCACCAACCTCCTTCCTGTGAACATGCGTGGATTGCTTCTACCTTCACCCAACCAATTTCATTTGGGCTACTCTTTCATCTCCCCCTCTCATAACCTTCTGGAGGAGATGCCAAACCCTTCCCCAAATTTGTTCATCAACCAGAATTTAAACATGGCACAAAACTTCTCTATGCCTCCTAGAACTGCAGTTGATGAGCTTCCAAGGCCACCCATTATTAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCTTACAACCGCTTCATCAAGGATGAGATACAACGCATTAAGGCTGTTAATCCTGATATAACCCACAGAGAAGCATTCAGCGCAGCAGCCAAGAATTGGGCCCACTTCCCGCACATTCACTTTGGTCTCATGCCTACTGAACAGACTGTGATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAAGAGGTTCACATCAAAGATGGCTTTTATGGTTCGGCTAATGTTGGTGTTTCACCCTACTAA 651 0.4578 MSSSSTTLSLDHLPHSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHLGYSFISPSHNLLEEMPNPSPNLFINQNLNMAQNFSMPPRTAVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKAVNPDITHREAFSAAAKNWAHFPHIHFGLMPTEQTVMKKTNVCQQEGEEVHIKDGFYGSANVGVSPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1282 216 PANTHER PROTEIN YABBY 4 1 214 - -
Lal16g1282 216 SUPERFAMILY HMG-box 122 171 IPR036910 -
Lal16g1282 216 Pfam YABBY protein 16 178 IPR006780 GO:0007275
Lal16g1282 216 PANTHER PROTEIN YABBY 6-RELATED 1 214 IPR006780 GO:0007275
Lal16g1282 216 Gene3D High mobility group box domain 123 175 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1282 Lal-Chr16 9030821 9036103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1282 26 214 C2C2-YABBY Transcription Factor Family AT4G00180 59.434 1.44e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal16g1282 YABBY 1.5e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1282 K25796 - gmx:100798441 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1282 16 9030821 9036103 Lal16g1282 16 9030821 9036103 ECH
Lal15g1347 15 15594866 15599624 Lal16g1282 16 9030821 9036103 LSH