Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1281 ATGGGTGCAATTTATCAACCTTGTAGGTTTAGTAGCTTATTGTTGATTATATTTGCATGGATGTTCATAAATTTAGGGAAGCCAACAAAAGCAGCAGGCATATTTCAACCCAGTAAATGGACTCTTGCACATGCAACATTTTATGGTGATGAGACTGCTTCTGCAACCATGGGAGGAGCATGTGGGTATGGGAATTTATTTGTGAATGGTTACGGGACTGATACAGCAGCTTTGAGCTCAACATTATTCAACAATGGATATGCATGTGGAACATGTTATCAAATGCAATGTTACCAATCAAAAGCATGCTATGCACATGTCAGTTATATTACAATCACTGCCACCAATATTTGCCCTCCTAATTGGTCGGAAGCCTCCGATAACGGTGGGTGGTGCAACCCACCACGAGCACATTTTGACATGTCTAAGCCTGCCTTCATGAAATTTGCACAGTGGAATGCTGGCATTGTCCCTGTTATGTATCGCAGAGTACCATGTGCAAGGAGAGGAGGGCTTAGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTGTATGTGATGAATGTAGGAGGTGGAGGAGATATTTCTAGCATAAGTGTGAAAGGAAGCAAAACTAGATGGATTAGTATGAGCCATAATTGGGGTGCATCATATCAAGCATTTGCAGCTCTTGGTGGCCAAGCTCTTTCATTCAAGATAACTTCTTACACAACCAAACAAACTATTTTTGCATGGAATGTTGCTCCTTCTAATTGGGCTGCAGGACTAACTTATTCTACAAGAGTTAACTTCAGTTAA 801 0.4095 MGAIYQPCRFSSLLLIIFAWMFINLGKPTKAAGIFQPSKWTLAHATFYGDETASATMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQMQCYQSKACYAHVSYITITATNICPPNWSEASDNGGWCNPPRAHFDMSKPAFMKFAQWNAGIVPVMYRRVPCARRGGLRFSFQGNGYWLLVYVMNVGGGGDISSISVKGSKTRWISMSHNWGASYQAFAALGGQALSFKITSYTTKQTIFAWNVAPSNWAAGLTYSTRVNFS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1281 266 SMART dpbb_1 75 161 IPR007112 -
Lal16g1281 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Lal16g1281 266 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Lal16g1281 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Lal16g1281 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Lal16g1281 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Lal16g1281 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Lal16g1281 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Lal16g1281 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Lal16g1281 266 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Lal16g1281 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Lal16g1281 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Lal16g1281 266 PANTHER EXPANSIN 3 265 - -
Lal16g1281 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Lal16g1281 266 SUPERFAMILY Barwin-like endoglucanases 15 189 IPR036908 -
Lal16g1281 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Lal16g1281 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Lal16g1281 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Lal16g1281 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Lal16g1281 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Lal16g1281 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Lal16g1281 266 Gene3D - 172 266 IPR036749 -
Lal16g1281 266 PANTHER EXPANSIN-A15 3 265 IPR002963 GO:0009664
Lal16g1281 266 Gene3D - 26 167 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1281 Lal-Chr16 9022281 9025066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1281 1 265 Expansin Gene Family AT1G12560 63.019 3.31e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1281 - - lang:109349912 448.358