Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1272 ATGGGTCGCATGCATAGCAGTGGCAAGGGTATGTCCGCTTCTGCACTGCCCTACAAGAGGACACCCCCAAGTTGGCTCAAGATCTCTTCCCAAGATGTGGAAGAGAATATATGCAAGTTCGCGAAGAAGGGTTTGACTCCATCACAGATTGGTGTCATTCTCCGAGACTCTCACGGTATTGCTCAGGTCAGAAGCGTCACTGGCAACAAAATTCTCCGTATCCTCAAAGCGCATGGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCAATCCGTAAGCATCTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGGATTCACCGACTTGCTCGTTACTACAAGAAGACTAAGAAGCTTCCACCAGTCTGGAAGTATCAAATTAGTCCCTGCATGATTCAAGTTCGAATGTTAGTGTCCATGGATGATGAAAAATACTCCGCAGGTCTCTCAGTTGTGTATCTCATAGTTCATATTATTCCCGGAATCCCGCGAGTCTACAACTGCCAGCACTCTGGTTGCTTAGAGAATGTATCAACTTCCGTTCTTCGGCCACTCTTCCTTGCTGCTGGACTAGCTATCTTCCATATGAATTTTAGACAATGTCTTTTTTGTTTAAGTGATGTTTGTTGA 678 0.4528 MGRMHSSGKGMSASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYQISPCMIQVRMLVSMDDEKYSAGLSVVYLIVHIIPGIPRVYNCQHSGCLENVSTSVLRPLFLAAGLAIFHMNFRQCLFCLSDVC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1272 225 Gene3D - 35 82 - -
Lal16g1272 225 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
Lal16g1272 225 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Lal16g1272 225 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Lal16g1272 225 Pfam Ribosomal protein S15 74 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lal16g1272 225 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lal16g1272 225 Gene3D - 83 150 - -
Lal16g1272 225 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 143 IPR023029 -
Lal16g1272 225 CDD Ribosomal_S15p_S13e 70 142 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lal16g1272 225 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Lal16g1272 225 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lal16g1272 225 PANTHER 40S RIBOSOMAL PROTEIN S13 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1272 Lal-Chr16 8959473 8961839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1272 1 142 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 90.845 3.23e-94 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1272 K02953 - egr:104442246 280.796