Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1271 ATGAATTCCTTTCATTCCCTTCTTTCTTTGTTTCTAGTGGTTGTTGTATTTCCCAACCCTCATATGGTTTATGGAAATGCAGAGCTGAGAGCTCTGATGGACTTAAAATCCTCTCTTGACCCAGAAGGGAAGTTGCTAGGTTCATGGACTAATGATGGTGACCCATGCAGTGGTTCATTTGAAGGGGTTGTGTGCAATGAGCACCACAAAGTGGCTAATATTTCTTTACCAGGAAGGGGTCTTATTGGTCATGTCTCATCAGCTGTGGCTGAACTTAGATGCTTGTCAGGTTTGTACTTGCATTACAACATTCTTTCAGGGGAGATACCAAGAGAAATTTCCAATCTCAATGAATTGGTTGATCTATATCTCAACATGAATAATCTATCTGGAACCATTCCTTCAGAGATAGGGAACATGACTAGTCTCCAAGTGCTGCAGTTAGGTTATAACCAACTAGTAGGGAAAATACCTAAGGAGATGGGTTCTTTGAAGCAGCTTAATGCTCTTGCTTTACAAAATAACAAATTAACTGGTCAAATTCCTTTAAGCTTGGGGAACTTGGAGAAGCTAAGGAGGCTAAATTTGAGCTTTAACAACTTCAATGGCATCATTCCTGCTACACTTGCTGATATTCCACACTTGGCAGTTCTAGATATTCAAAACAATTCTATATCCGGGACTGTTCCTTCAGCGTTGAGAAGATTAAGGGAAGGATTCCAAGGTGCAAACAATCCAGGTTTATGTGGAGTTGGATTTTCTACTTTGAGAGCTTGCAACAAAGATAAAGATTTATATGATAACAGCCAGATTGATGCTTCAAATGTATCCGTAAACAACAATCCTCCAAAACATTTCCCTGAGCCTGCAAATATTGAGCTACATTGTAACCATACACATTGCTCAAAGTCAAGGTTTCCTCAGGCTGTCATTGCAGCAAGTGTAGTAACAATCAGTATAACATTTATAGGTATTGGATTTTTTACATTTGTTAGATGTCGTCGGCGAAAGCAAAGGGTTAGAAATACATCAGATTCTTCCGAAAGCCAACTTAGTCCTGAGCAGCCTAAAGAGTTCAACAGAAGAAGTCCATCTCCTCTTGTTAATGTTGACTATAGTTATAAAGCATGGGATGCATTGGCTGATGGTCAAAATGCAAGTGGATCATCCCATGAACATTTAAACAATTTTAGGTTCAATATCGACGAGATTCAATCGGCAACACAGTACCTTTCTGAGGCCAATTTATTGGGTAAGACCAAATTCTCTGCAGTATATAAAGGAGTCCTCAGAGATGGGTCTCTTGTGGCTATTAGAAGCATTAATGTAACATGCTGCAAAACAGAGGAAGCTGAATTTGTCAAGGGGTTGAGCCTATTAACATCACTGAGACATGAAAACATTGTTAAGATGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCAAGGGTAATTTGTCTCAATATCTTGATTTGGAAGATGGTAGTGATCATGTGCTTGAATGGTCCAATAGGGTCTCTATCATCAAGGGCATTGCAAAAGGTATTGGATATCTTCACAGCAATGAAGAAACCAAACCTACAATAGTACACCAAAATATTTCAGTTGAAAATATTGTTCTAGACAATAAATTTAACCCATTGATCATGGATGCTGGTCTCCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATATCTAGCTCCTGAATATATTACCACAGGAAAGTTTACTGAGAAAAGTGACATATATGCATTTGGTGTTATTGTTCTTCAACTTCTATCTGGGAAAACAACAATAGGAGGTTCAATAAAGATAGCACTTGAGTCTTTCAAATTTGATGATTTTGTTGACACAAATATGAAGGGAATATATTCTAAATCTGAAGCAACAATTCTTTCAAAGCTTGCAATGTTGTGCACTCATGAAGTTCCTGACCAAAGGCCAACCATGATGGAAGTGATTCAGGAAATGACTATGCTTTCATGA 2043 0.3842 MNSFHSLLSLFLVVVVFPNPHMVYGNAELRALMDLKSSLDPEGKLLGSWTNDGDPCSGSFEGVVCNEHHKVANISLPGRGLIGHVSSAVAELRCLSGLYLHYNILSGEIPREISNLNELVDLYLNMNNLSGTIPSEIGNMTSLQVLQLGYNQLVGKIPKEMGSLKQLNALALQNNKLTGQIPLSLGNLEKLRRLNLSFNNFNGIIPATLADIPHLAVLDIQNNSISGTVPSALRRLREGFQGANNPGLCGVGFSTLRACNKDKDLYDNSQIDASNVSVNNNPPKHFPEPANIELHCNHTHCSKSRFPQAVIAASVVTISITFIGIGFFTFVRCRRRKQRVRNTSDSSESQLSPEQPKEFNRRSPSPLVNVDYSYKAWDALADGQNASGSSHEHLNNFRFNIDEIQSATQYLSEANLLGKTKFSAVYKGVLRDGSLVAIRSINVTCCKTEEAEFVKGLSLLTSLRHENIVKMRGFCCSRSRGECFLIYDFATKGNLSQYLDLEDGSDHVLEWSNRVSIIKGIAKGIGYLHSNEETKPTIVHQNISVENIVLDNKFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGKFTEKSDIYAFGVIVLQLLSGKTTIGGSIKIALESFKFDDFVDTNMKGIYSKSEATILSKLAMLCTHEVPDQRPTMMEVIQEMTMLS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1271 680 Gene3D Ribonuclease Inhibitor 27 140 IPR032675 -
Lal16g1271 680 MobiDBLite consensus disorder prediction 339 366 - -
Lal16g1271 680 Gene3D Transferase(Phosphotransferase) domain 1 491 679 - -
Lal16g1271 680 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 4 679 - -
Lal16g1271 680 SUPERFAMILY Protein kinase-like (PK-like) 387 676 IPR011009 -
Lal16g1271 680 Pfam Leucine rich repeat 190 236 IPR001611 GO:0005515
Lal16g1271 680 Pfam Protein tyrosine and serine/threonine kinase 415 675 IPR001245 GO:0004672|GO:0006468
Lal16g1271 680 Gene3D Ribonuclease Inhibitor 143 261 IPR032675 -
Lal16g1271 680 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 679 - -
Lal16g1271 680 MobiDBLite consensus disorder prediction 344 359 - -
Lal16g1271 680 ProSiteProfiles Protein kinase domain profile. 411 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1271 680 Gene3D Phosphorylase Kinase; domain 1 376 489 - -
Lal16g1271 680 SUPERFAMILY L domain-like 28 236 - -
Lal16g1271 680 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1271 Lal-Chr16 8950279 8954788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1271 10 524 Miscellaneous Gene Families AT4G22730 57.786 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Lal16g1271 PK_Tyr_Ser-Thr 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1271 - - gmx:100784155 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1271 16 8950279 8954788 Lal16g1271 16 8950279 8954788 ECH