Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1260 ATGGAGGCCAGTGGCGGAGTTAGCGGCGGCGTTACGGTGGTGGGGTTAGATGCTCCGTCGGAATACCATGTAGCTCCGAGGACGGAAAACGCAGCTCCGGCCGGAGGATCCACGGCACCGAATCCGGCCACTATAGAGAGTGTTCCACCGTCACTTACGGCGGTTGTTACGGCGGCGCCGTCTGAGGTACCGGCACCGGGGAAGAAGAAGAGGGGCCGGCCTAGAAAGTATGCACCGGACGGTTCGGTGACTACGGCGCTGTCCCCGAAGCCGATATCTTCTGCTGCTCCGATGATGCCGCCGGTGATTGATTTCTCGGCGGAGAAGCGCGAAAAAGTGAAGCTAAGCTCAGTGAGCAAAGCCAAGTTTGAGATAGAGAATTTAGGTGAATGGGTTGCAAGCTCAGTTGGTGCTAAATTTACGCCCCATATCATCACTGTTAATGCTGGGGAGGATGTTACCATGAAAGTAATATCGTTGTCTCAGCAAGGGCCTAGGACTATATGCATTCTTTCAGCTAATGGTGTCATATCGAGTGTGACACTTGGTCAGCCTGATTCTTCTGGGGGTACATTGACATATGAGGGACGGTTTGAAATTCTGTCTCTATCTGGCTCATTTGTGCCAAATGAAAGTGGAGGAACACGAAGCAGAGCAGGCGGCATGAGTATTTCTTTAGCTAGTCCAGATGGCCGTGTCGTAGGTGGGGGAGTAGCTGGTCTATTGGTGGCTGCTAGTCCTGTGCAGGTAGTCGTAGGCAGTTTTCTGGCGGGAAATCAATACGAACAGAGACCAAGAAAACAGAAACATGAGGTTATATCAACTGTGACACCAACTGCAATTGTTCCTTTCTCCACTGCTGATCCAATACCTTTTCTATCATCAACACCCTCCTTCCGTGGAGATAATTGA 912 0.5132 MEASGGVSGGVTVVGLDAPSEYHVAPRTENAAPAGGSTAPNPATIESVPPSLTAVVTAAPSEVPAPGKKKRGRPRKYAPDGSVTTALSPKPISSAAPMMPPVIDFSAEKREKVKLSSVSKAKFEIENLGEWVASSVGAKFTPHIITVNAGEDVTMKVISLSQQGPRTICILSANGVISSVTLGQPDSSGGTLTYEGRFEILSLSGSFVPNESGGTRSRAGGMSISLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQYEQRPRKQKHEVISTVTPTAIVPFSTADPIPFLSSTPSFRGDN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1260 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 288 IPR039605 GO:0003680
Lal16g1260 303 MobiDBLite consensus disorder prediction 34 51 - -
Lal16g1260 303 MobiDBLite consensus disorder prediction 22 93 - -
Lal16g1260 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 255 IPR005175 -
Lal16g1260 303 ProSiteProfiles PPC domain profile profile. 137 279 IPR005175 -
Lal16g1260 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 288 - -
Lal16g1260 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 263 - -
Lal16g1260 303 Gene3D - 142 274 - -
Lal16g1260 303 CDD DUF296 141 232 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1260 Lal-Chr16 8856306 8860940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1260 1 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.696 2.34e-114 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1260 - - gmx:100794202 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1260 16 8856306 8860940 Lal16g1260 16 8856306 8860940 ECH