Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1249 ATGAATACATTTTCACATGTTCCTCCAGGCTTTCGATTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGGTAACATCTAAAAGGATCGATGTAGATGTCATCAAAGATATCGACCTCTATAAAATTGAACCATGGGATCTTCAAGAATTATGCAAAATAGGAACCAATGAACAAAGTGACTGGTATTTCTTTAGTCATAAGGATAAGAAGTACCCAACAGGAACTCGTACCAATAGAGCTACAAAAGCTGGATTTTGGAAAGCCACAGGAAGAGATAAAGCAATATACACTAAACATTGTTTGATTGGGATGAGAAAAACTCTAGTCTTTTATAAAGGAAGAGCTCCAAATGGACAAAAATCTGATTGGATCATGCATGAGTACCGGCTAGAAAATAATGAAAATGGAACTACTCCGGAAGAAGGCTGGGTTGTATGTAGAGTATTCAAGAAGAGAATGCCAACAATGAGAAAAGTGGGGGAGTATGAGTCATGGTATGATGACCAAGTTTCATTAATGCAAGATCTTGAATTTCCAAGGCCAATCTATCACCACCCTTATGCATCATCACCATATCAACAACACAACCATCACTGCAAGGGAGAGCTGGAATTGCAATACAACATGCCCCATGATGCTAATTTCCTCCAACTTCCACAGCTAGAAAGCCCTAAAGTTCCTTATACTAACTTTGATAGTAATAATAGCAATGGAACTATGACCTTGCAATTCTCATCTCCGATACAAGAAGATCAGGCACAGACACAACATTGCCATCATCACCAAAACTCACACTCGATTTATGGTAACAATGATGAAGCTGCATCGGAACAAGTGACAGATTGGCGAGTACTTGACAAATTTGTTGCTTCTCAGCTAAGTAACGACCAAAATGCTTCCAATGCAGCTATCCTCCATGTTGCTGAACAAATTACTATGCTCGCAAACGGATCCAAAAGGGCTCAAACTTCACAGGAATATGCTTCAACACCCACCTCCAGTGACCAGAATGACCTGTGGAAGTGA 1041 0.3948 MNTFSHVPPGFRFHPTDEELVDYYLRKKVTSKRIDVDVIKDIDLYKIEPWDLQELCKIGTNEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYTKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLENNENGTTPEEGWVVCRVFKKRMPTMRKVGEYESWYDDQVSLMQDLEFPRPIYHHPYASSPYQQHNHHCKGELELQYNMPHDANFLQLPQLESPKVPYTNFDSNNSNGTMTLQFSSPIQEDQAQTQHCHHHQNSHSIYGNNDEAASEQVTDWRVLDKFVASQLSNDQNASNAAILHVAEQITMLANGSKRAQTSQEYASTPTSSDQNDLWK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1249 346 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Lal16g1249 346 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Lal16g1249 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 324 - -
Lal16g1249 346 MobiDBLite consensus disorder prediction 260 279 - -
Lal16g1249 346 MobiDBLite consensus disorder prediction 327 346 - -
Lal16g1249 346 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lal16g1249 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 324 - -
Lal16g1249 346 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1249 Lal-Chr16 8731029 8735950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1249 1 344 NAC Transcription Factor Family AT1G62700 54.094 3.12e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal16g1249 NAM 4.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1249 - - gmx:100783529 508.064