Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1247 ATGGTGAGGGGAAAGACTCAGATGAAGCGCATCGAAAATGAGACAAGTAGGCAAGTAACTTTCTCAAAGAGAAGAAATGGGTTGCTCAAGAAAGCTTTTGAGCTTTCAGTGCTGTGTGATGCTGAAGTGGCTCTCATGGTTTTCTCTACAAGAGGGAAGCTCTATGAGTTCTCCAGTTCTAGTATAAACAAAACGGTCGAGCGCTATCAAAAGAAAGTCAAGGACCTGAGTTACAACACCAACGGAATTCAAGAAAATACACAGCACTTAATGGATGGTGATATCAGCATGGCAAAGAAGATGGAGCACCTAGAAGTTTCCAAAAGGATGCTTTTGGGAGAAGGATTGGGTACATGCTCTATTAATGACTTACAACAGCTAGAGAAGCAGCTAGAACGAAGCTTAAACAAGATTAGGGCAAAGAAGAGTCAATTGTTCAAGGAGCGAATTGAGAAGCTAAGGGAAGAGGAGAAATGCTTACTTGAAGAGAATAGACGCTTACATGAGCAGTGTAAGATTGAAAAACAACAATCTTTAAGTAAGCAAGACCTACAAGATCTCGTGGGAGAAATAAGAAGTGAAGAAGAGGTGGAGACGGAGTTGTTCATAGGGCGACCTGAGAGACGAATGGCTTAA 636 0.4182 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALMVFSTRGKLYEFSSSSINKTVERYQKKVKDLSYNTNGIQENTQHLMDGDISMAKKMEHLEVSKRMLLGEGLGTCSINDLQQLEKQLERSLNKIRAKKSQLFKERIEKLREEEKCLLEENRRLHEQCKIEKQQSLSKQDLQDLVGEIRSEEEVETELFIGRPERRMA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1247 211 Coils Coil 121 170 - -
Lal16g1247 211 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lal16g1247 211 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal16g1247 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal16g1247 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal16g1247 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal16g1247 211 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Lal16g1247 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal16g1247 211 PANTHER MADS-BOX PROTEIN SOC1 1 207 - -
Lal16g1247 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal16g1247 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal16g1247 211 PANTHER MADS BOX PROTEIN 1 207 - -
Lal16g1247 211 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Lal16g1247 211 Pfam K-box region 95 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal16g1247 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1247 Lal-Chr16 8711880 8720836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1247 1 211 MADS-box Gene Family AT4G22950 57.746 3.05e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal16g1247 K-box 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1247 - - gmx:100805260 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1247 16 8711880 8720836 Lal16g1247 16 8711880 8720836 ECH
Lal16g1247 16 8711880 8720836 Lal6g0902 6 6240015 6245525 ECH
Lal16g1247 16 8711880 8720836 Lal22g0801 22 5915803 5921800 ECH