Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1242 ATGAACATTCTCATACAATCATCAAATATACCAGAATACCACTCATCTAGCCATCTTCAAAGTGATGAAAAAGTGATATTATTAACATCAGCAAGGCCAAAGAAACGTGCAGGGAGGCGAAAACTCAAAGAAACAAGGCACCCCATATACCGAGGAGTGCGAAGAAGGAACAACAAGTGGGTCTGTGAGGTACGTGTTCCCAAAAAATCCACAAGGATATGGTTAGGAACATACCCTACACCTGAAATGGCAGCTAGAGCACACGATGTTGCAGTTCTCACTCTTAGGGGTAACTCTGCTTGCTTAAACTTTGCTGACTCACGGTGGCGGTTGCCATTGCCGAAAACCACCGATGCGGAGGAGATAAGAAGAGTTGCGGCAAAAGCTGCAGAGTTATTTGGGGTTGAAGATAAAGAAAATTACGAGAAGCCAAGTGTGAATGCTGTTACTGATGAATATGAAGTTTGCAGTGGCGGTAATAACGTTGAGGTTGGGATAATGGAAGATATAAAGAAGGATGATGGGAATTTTAATGGATTGTTTTTTGAAGAAGGTGCAAGTTTTTCACCATTTGAGGATATTCATGAATGGTTTCAGAGTATGGCGGATGAACCTTTACGATCTCCTTCTCCTTTTGCGATGCTGAAGTATCTTTGTGGAACTTTGACACGTGAAGGATGA 681 0.4214 MNILIQSSNIPEYHSSSHLQSDEKVILLTSARPKKRAGRRKLKETRHPIYRGVRRRNNKWVCEVRVPKKSTRIWLGTYPTPEMAARAHDVAVLTLRGNSACLNFADSRWRLPLPKTTDAEEIRRVAAKAAELFGVEDKENYEKPSVNAVTDEYEVCSGGNNVEVGIMEDIKKDDGNFNGLFFEEGASFSPFEDIHEWFQSMADEPLRSPSPFAMLKYLCGTLTREG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1242 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 6 210 - -
Lal16g1242 226 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Lal16g1242 226 ProSiteProfiles AP2/ERF domain profile. 49 105 IPR001471 GO:0003700|GO:0006355
Lal16g1242 226 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Lal16g1242 226 SMART rav1_2 49 111 IPR001471 GO:0003700|GO:0006355
Lal16g1242 226 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Lal16g1242 226 Gene3D AP2/ERF domain 49 106 IPR036955 GO:0003700|GO:0006355
Lal16g1242 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 210 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1242 Lal-Chr16 8655861 8656584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1242 26 140 AP2-EREBP Transcription Factor Family AT1G12610 70.690 6.55e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g1242 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1242 - - gmx:100795696 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1242 16 8655861 8656584 Lal16g1242 16 8655861 8656584 ECH