Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1240 ATGTCATCTTCATCATCATTATCTTCTAAGAAGCACCCAGTGTACCACGGCATTCGGCGCCGTGGCGGAAAATGGGTATCTGAAATCCGGGAGCCACGTAAGACTAACCGCATATGGCTAGGCACATTCCTCACACCGGAGATGGCGGCTGCCGCTTATGACGTGGCGGCATTGGCACTAAAAGGCGGCGAAACTGTTCTCAACTTCCCTGAATCAATTGGGAGGTATCCGGTGCCAGCAACCAATTCCCCTGACGACATTCGCGCAGCCGCCATTGCTGCCGCTGAACTAATGGAGGCACCGGAAGCTAGCCGTAATCAATTAAGTAATGTTTTTCAACCTGAAAATGCTGCTACTCCATGGTTTTCTGAAACTGGGTTCTTGGATGAGGAAACAATATTTTCTATGCCAAGTTTACTCATGGACATGGCTCAAGGAATGCTGCTATCACCGCCGAGAATGAGCCCTCACAACTCACCGGAAAATTCAGTAGGAGAAAGTTTGTGGAACTATTTTTGA 519 0.4875 MSSSSSLSSKKHPVYHGIRRRGGKWVSEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGETVLNFPESIGRYPVPATNSPDDIRAAAIAAAELMEAPEASRNQLSNVFQPENAATPWFSETGFLDEETIFSMPSLLMDMAQGMLLSPPRMSPHNSPENSVGESLWNYF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1240 172 MobiDBLite consensus disorder prediction 153 172 - -
Lal16g1240 172 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Lal16g1240 172 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Lal16g1240 172 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Lal16g1240 172 MobiDBLite consensus disorder prediction 155 172 - -
Lal16g1240 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 172 - -
Lal16g1240 172 PANTHER ETHYLENE RESPONSE FACTOR 2 172 - -
Lal16g1240 172 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Lal16g1240 172 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Lal16g1240 172 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1240 Lal-Chr16 8647291 8647809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1240 9 171 AP2-EREBP Transcription Factor Family AT5G52020 52.874 6.84e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g1240 AP2 8.6e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1240 16 8647291 8647809 Lal16g1240 16 8647291 8647809 ECH
Lal16g1240 16 8647291 8647809 Lal23g1510 23 15303642 15304193 PCT