Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1235 ATGGCGACGACAGGTTCACCGAACCACTCCACCGATGACGCCGACATCGATCCGACACCGCTCCTCTCCAGTTCCGGCGGTTCCTCCGACGAATCAAACTCCAGCCGCCGATTCGCACGTCGGCAAGGGTTACGTCAAGCGGCACGATTCCTCCGTCAAGCGAGTGGCCAGAGGATATTGCGAGAGCCGTCGATGGTGGTGAGAGAGACGGCGGCGGAGCAATTGGAGGAGCGCCAGAGCGATTGGGCTTATTCGAAGCCGGTGGTGGTGCTCGATATTCTCTGGAATTTCGCGTTCGTCGTTGCTGCTGCTACCGTGTTGGTTTTGAGTGTGAATGAAACTCCGATCATGCCTTTGAGGTTGTGGCTTGTTGGTTATGCTCTGCAGTGCGTGCTTCATGTGGTTTGTGTTTGCGTTGAGTATCGGAGGAGGAGAAGGAACCAGAGGGAAGGGTCCAACAATGCCGCGGTAGCGGTGACGCAGGATGGTATTGGAGGAAGTGATCTAAGCTCTGGTTCTATTGAAGGCTCTGGTTCTGGACAGTATGGATTATTGTCTCAATTGGATGAAGAGGAAGGCCGTGAAAATAATGTGTTCCAATGTGCCATGGGTTTGGGCACGGAAGGTGGATCTCTGCGACTGCCAAGGCCTTTATGCAAGGAAGAAGGATCTTCTCAGTCTGGAACAGCCATTCTAAGAGTAAAATTGAGATATGCTGAGTATGGCGAAGCATTTGGAATCGGCCAATACAATGTTTTCATTTATTTGGTGGGTCATTGGATTCTATTGGGTTTCAGCCGGTGGCCAAGGTTATGCATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTGGCCTGCATCATTGGCATTGCCGTTTGCTGTTGCCTTCCATGCATCATTGCACTTCTGTATGCAGTGGCAGACCAGGCAAGTCATGGTTATTATAGGTTTTTGTTTGGCTTGGACGGTGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAGACTTGAAAATGGTGAGAAACTTGCTGGTAATACCGAAGGATCTGCTGGAGGAATAATGACTGAATGTGTGGTTGATTCACCTATTGAACATGTTCTTTCTGATGAAGATGCGGAATGTTGCATCTGTCTTTCAGCATATGATGATGGGATTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTACCTGCGTCGACAAATGGCTGTATATTAATGCTACTTGCCCTCTCTGCAAATATAACATCTTAAAAAGTACCAGCCATGGTCATGAGGAAGTGTAG 1317 0.4806 MATTGSPNHSTDDADIDPTPLLSSSGGSSDESNSSRRFARRQGLRQAARFLRQASGQRILREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNFAFVVAAATVLVLSVNETPIMPLRLWLVGYALQCVLHVVCVCVEYRRRRRNQREGSNNAAVAVTQDGIGGSDLSSGSIEGSGSGQYGLLSQLDEEEGRENNVFQCAMGLGTEGGSLRLPRPLCKEEGSSQSGTAILRVKLRYAEYGEAFGIGQYNVFIYLVGHWILLGFSRWPRLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQASHGYYRFLFGLDGASKEDIEQLSKFKFRRLENGEKLAGNTEGSAGGIMTECVVDSPIEHVLSDEDAECCICLSAYDDGIELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSTSHGHEEV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1235 438 MobiDBLite consensus disorder prediction 1 41 - -
Lal16g1235 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 431 IPR013083 -
Lal16g1235 438 ProSiteProfiles Zinc finger RING-type profile. 383 424 IPR001841 -
Lal16g1235 438 CDD RING-H2_RNF111_like 382 426 - -
Lal16g1235 438 SUPERFAMILY RING/U-box 373 430 - -
Lal16g1235 438 Pfam Ring finger domain 382 424 IPR001841 -
Lal16g1235 438 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 190 - -
Lal16g1235 438 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 271 438 - -
Lal16g1235 438 MobiDBLite consensus disorder prediction 1 33 - -
Lal16g1235 438 SMART ring_2 383 423 IPR001841 -
Lal16g1235 438 PANTHER TARGET OF ERK KINASE MPK-1 3 190 - -
Lal16g1235 438 PANTHER TARGET OF ERK KINASE MPK-1 271 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1235 Lal-Chr16 8614040 8619213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1235 1 429 C3H Transcription Factor Family AT1G68070 36.239 3.87e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1235 - - gmx:100779757 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1235 16 8614040 8619213 Lal7g0858 7 15140899 15144256 LSH
Lal16g1235 16 8614040 8619213 Lal19g1008 19 13943628 13946699 LSH
Lal15g1373 15 15859046 15864486 Lal16g1235 16 8614040 8619213 LSH