Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1233 ATGCCTCAGGGAACCCTTGAAGTTTTTCTTGTTAGTGCCAAGGGCCTTGAGAATACTGATTTTCTTTGTAACATGGATCCTTTTGTACAACTCATATGCCGCACACAACAGCAACAAAGTAGTATTGCATCAGGCAAAGGAAGTGATCCAGAGTGGAATGAAATTTTTTTATTCAACTTGTCTGAAGGTGTTTCGGAACTCACATTGAAGATCATGGACAGTGATACAGGAACCGCTCATGATCTCGTAGGAGAAGTTAGTATTCCACTAGAACCTTTGTTCATTGAAGGAAACCTACCACCCACCGCATATAATGTTGTCAAAGCTGGACAATATTGTGGAGAGATTAAAGTTGGGCTTACTTTTAGGCCCGAGGAGCAGCGCAGTCGAGGGCTAGAGGAAAATTTTGGTGGATGGAAGGAGTCTGCTTACTGA 435 0.4276 MPQGTLEVFLVSAKGLENTDFLCNMDPFVQLICRTQQQQSSIASGKGSDPEWNEIFLFNLSEGVSELTLKIMDSDTGTAHDLVGEVSIPLEPLFIEGNLPPTAYNVVKAGQYCGEIKVGLTFRPEEQRSRGLEENFGGWKESAY 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1233 144 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lal16g1233 144 SMART C2_3c 5 102 IPR000008 -
Lal16g1233 144 Gene3D C2 domain 2 125 IPR035892 -
Lal16g1233 144 Pfam C2 domain 4 93 IPR000008 -
Lal16g1233 144 PANTHER OS02G0640000 PROTEIN 1 142 - -
Lal16g1233 144 PANTHER C2 DOMAIN-CONTAINING 1 142 - -
Lal16g1233 144 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 126 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1233 Lal-Chr16 8597706 8600285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1233 4 94 C2H2 Transcription Factor Family AT4G21160 28.571 6.53e-08 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1233 16 8597706 8600285 Lal15g1376 15 15894730 15895374 LSH