Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1230 ATGTGGTCGTCAATCATGATTTCAGAGCGGCGTAGAACATTCCAGAACCTTCTATTCACATTCACACACACCCGAAACATGGGTGGAGGACCACGCACTTTCCCTGGCGGAGTATCCAAATGGAAATGGAAGCGAATGCACGAGAAACGTGCCAGAGACAAAGAACGAAGACTCCTCGACCAAGAGAAACAACTTTACGAAGCTCGTATTCGTTCTCACGTTCGATCCAATCTCTCACCACCGCAACCTCCGCCTCACCACCTTTCTTCCTCCGCCACTGCCCCCACTCACGGCCCTATGTCCCCTCACGACCATGTCAAGGCTCTTGCTGATCGATTCATGAAGGAAGGTGCTGAAGATCTCTGGAATAACGATGACGGTCCGATGACGTCATCGCCTACCGTTACTCCTCCGCCTCTTCGAGGTGTGACTAGCACGCGCCACGGTTCTATTTCATCGCCGGTGGATTTGAGGAAATTGATTCAGGATGGTTCAAATTCGATGAATTCGAATTCGGCCGGTAATTATAGGCAGACTAGGGGTTTTTCGGTGGTTAGGAATGTGACGAGTAAGAGAGTTGTGCCAGCTGGGAAGAGGAGATTTTGGAGAAAAGATAGTGATAGTGATAGCGGTTTTGAGAGTGGAGGTGAAGAATGTGAGAGGGATGTGAAGAAAATGGGAAGTAGTGCTGCTTTGGGGAAATATGATGTGAAAAGGGAGAGGAGGGTTATACCAAAGTCATATGATGAAGAGAGTGATTTTAAGGAGAAGGTTGAGTTGATTAAGTATGAACTTAACAAGAGGAAATTAGAACAGAGTGAAGGGCGAAAGCTTGAAGAAGAAACTGTCTTGACTCAGAAAAGATTCGATGAGTGCGGTGTATCGCCATTGACAGTGAAGGCTCTTTCTGCAGCTTCTTATATTCATATGACCCGGGTACAAGAGGCTAGCCTTCCTATTTGCCTTGAAGGTAAGGATGTTTTGGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAAAACATCTCAACGTGTGCCTCCAATACTTGTTCTTATCCTCTGCTCTACCAGAGAGCTTGCGAGTCAAATTGCTGCGGAAGCAAAGGTCTTGCTCAAATATCATGATGGCATTGGGGTACAAACTCTAGTAGGAGGTGTACGATTTAAAGTCGACCAAAAGCGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACTCCTGGTAGGTTGCTAGATCATATTGAGAACAAATCTGGAATATCCTTGCGATTAATGGGCTTGCAGATGCTTGTACTAGATGAAGCTGATCATTTACTGGACCTGGGGTTTCGGAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGCTGTTTTCTGCAACCATGCCGAAGGAGGTCCGTCGTGTATCTCAGCTTGTTTTGAAAAGAGAACACACATATGTTGATACAGTTGGGATGGGTTGTGTGGAAACTCCTTTGAAGGCAAGTACATTAACTGTTGTTATACTCTATGAACTGCGAAGAGTAAAGCAATCTTATCTTATTGCTCCACATGAATCACATTTTCAATTAGTGTACCACATTCTGAAGGAGCATATCATGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTGACATCACTCATGTATAAACTTCTCCGGGAGATGAAAATGAATGTTAGGGAGATACATTCTCGAAAACCTCAGATCTATCGGACTCGCATATCAGACGAGTTCAAGGAATCCAAACAACTGATTCTTGTATCATCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAAGTAGGGATGCCTACTGACCGTGAACAATATATACATCGTCTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAGTATTTTTTACATGAGATCAAGGATCTCCCTCTTGAGAAATTCAATTTACCAGATATAGATCCACAGACAAATATTAAGGTTGAGGATTCAATGGCAAAGATTGAAAGTGATACCAAAGAAGCAGCTTATCATTCTTGGCTTGGTTATTATAACTCTATCAGGGAAATAGGGAGGGAAAAGAGCACTGTATCTGATCTGGCAAACCGATTTTCCGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGCAGATAG 2313 0.4328 MWSSIMISERRRTFQNLLFTFTHTRNMGGGPRTFPGGVSKWKWKRMHEKRARDKERRLLDQEKQLYEARIRSHVRSNLSPPQPPPHHLSSSATAPTHGPMSPHDHVKALADRFMKEGAEDLWNNDDGPMTSSPTVTPPPLRGVTSTRHGSISSPVDLRKLIQDGSNSMNSNSAGNYRQTRGFSVVRNVTSKRVVPAGKRRFWRKDSDSDSGFESGGEECERDVKKMGSSAALGKYDVKRERRVIPKSYDEESDFKEKVELIKYELNKRKLEQSEGRKLEEETVLTQKRFDECGVSPLTVKALSAASYIHMTRVQEASLPICLEGKDVLVKAKTGTGKSAAFLLPAIETVLKAMSSKTSQRVPPILVLILCSTRELASQIAAEAKVLLKYHDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATMPKEVRRVSQLVLKREHTYVDTVGMGCVETPLKASTLTVVILYELRRVKQSYLIAPHESHFQLVYHILKEHIMQTPDYKVIVFCITGMVTSLMYKLLREMKMNVREIHSRKPQIYRTRISDEFKESKQLILVSSDVSSRGMNYPDVTLVIQVGMPTDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLHEIKDLPLEKFNLPDIDPQTNIKVEDSMAKIESDTKEAAYHSWLGYYNSIREIGREKSTVSDLANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1230 770 Pfam Helicase conserved C-terminal domain 549 653 IPR001650 -
Lal16g1230 770 Gene3D - 527 749 IPR027417 -
Lal16g1230 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 549 699 IPR001650 -
Lal16g1230 770 SMART ultradead3 306 517 IPR014001 -
Lal16g1230 770 Coils Coil 44 64 - -
Lal16g1230 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 501 IPR014001 -
Lal16g1230 770 CDD SF2_C_DEAD 530 663 - -
Lal16g1230 770 MobiDBLite consensus disorder prediction 74 104 - -
Lal16g1230 770 Gene3D - 250 502 IPR027417 -
Lal16g1230 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 287 315 IPR014014 GO:0003724
Lal16g1230 770 Pfam DEAD/DEAH box helicase 311 489 IPR011545 GO:0003676|GO:0005524
Lal16g1230 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 673 IPR027417 -
Lal16g1230 770 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 30 133 - -
Lal16g1230 770 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 264 769 - -
Lal16g1230 770 SMART helicmild6 573 654 IPR001650 -
Lal16g1230 770 MobiDBLite consensus disorder prediction 125 151 - -
Lal16g1230 770 PANTHER RNA HELICASE 264 769 - -
Lal16g1230 770 PANTHER RNA HELICASE 30 133 - -
Lal16g1230 770 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1230 Lal-Chr16 8585573 8590560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1230 289 684 Eukaryotic Initiation Factors Gene Family AT3G19760 26.980 1.09e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1230 - - lang:109349967 1355.12