Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1228 ATGGCCTTTAGTGGAACCCAACAAAAATGCAAGGCTTGTGATAAAGTTGTTCACTTTGTGGAATCAGTTTCTGCTGATGGTATTTCTTATCACAAGAATTGTTTCCGATGTAGCCATTGCAATGGACTCCTAGCAATGAGTAACTATTCATCATTGGATGGAACTTTGTACTGCAAGCCTCACTTTGAACAGGTTTACAAGGAAACTGGCATCAAGAAACCCCAGTCATCTGCAAAGCCTCCAAAGGAGCTGACTAAGACAGCTAGCAAACTCTCAGCTTTCTTCTCTGGTACTCAAGAGAAATGTTCAACATGCAAGAAAACTGTATATCCATTGGAAAAGTTGACTGTGGAAGGTGAGTTCTACCATAAATCATGCTTTAGGTGTACACATGGAGGATGCTTTCTCACCCCTTCAACCTATGCTGCACTTGATGGATTTCTTTATTGCAAACCTCACTTCTCTCAACTCTTCAAGGAGAAGGGAAGTTATAGTTATCTCTCCAAGACAGCTTCATTGAAGAAAACTGAACAGCAACAAGCAGAGACAGCATCAGATTCTGAACCAAAGGAAACAACAAATGAACAAGAAGAGGTTGTGGTCACACAAGAGTAG 615 0.4098 MAFSGTQQKCKACDKVVHFVESVSADGISYHKNCFRCSHCNGLLAMSNYSSLDGTLYCKPHFEQVYKETGIKKPQSSAKPPKELTKTASKLSAFFSGTQEKCSTCKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLTPSTYAALDGFLYCKPHFSQLFKEKGSYSYLSKTASLKKTEQQQAETASDSEPKETTNEQEEVVVTQE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1228 204 Gene3D Cysteine Rich Protein 4 72 - -
Lal16g1228 204 Gene3D Cysteine Rich Protein 96 166 - -
Lal16g1228 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 166 - -
Lal16g1228 204 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lal16g1228 204 MobiDBLite consensus disorder prediction 177 204 - -
Lal16g1228 204 Pfam LIM domain 10 64 IPR001781 -
Lal16g1228 204 Pfam LIM domain 102 157 IPR001781 -
Lal16g1228 204 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal16g1228 204 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 197 - -
Lal16g1228 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal16g1228 204 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Lal16g1228 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 71 - -
Lal16g1228 204 SMART lim_4 9 61 IPR001781 -
Lal16g1228 204 SMART lim_4 101 153 IPR001781 -
Lal16g1228 204 PANTHER OS06G0237300 PROTEIN 1 197 IPR045268 GO:0051015
Lal16g1228 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1228 Lal-Chr16 8571176 8573584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal16g1228 LIM 7.7e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1228 - K09377 gmx:100499865 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1228 16 8571176 8573584 Lal16g1228 16 8571176 8573584 ECH