Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1223 ATGAAGATGAAGTTATATCCTTCATTATTGTTGGTTGGTTTGATTTCCACTTTGTCTTTTGTAGCATCAAATGAAGTTTTGGCACTTAAAGCATTCAAAGAAGCTGTGTTTGAAGATCCACATCTACTTTTGTCCAATTGGAATACACTGGTTTCAGATCCTTGTGATTGGTATGGTGTTTTATGCACCCCGGATCGAAATCATGTCATCAAAATAAACATCGCAGCGTCATCATTAGGGGGATTTCTTGCACCAGAACTGGGGCAAATGATCTACTTGCAAGAACTGGTCTTGCATGACAACAATCTTGTTGGAACAATACCGAAAGAGTTGGGCATGTTGAAATATCTCAAGGTGTTGGATTTGGGAATGAATCAGTTATCAGGATCAATTCCAGCAGAGATTGGAAATTTGGGCCAAATTATGAAAATAAATCTGAATTCCAATGGTCTGACTGGTAGGATACCCACAGAGCTCGGAAATTTGAAATACCTTCGAGAACTGCGGCTGGATAGGAATAAGCTTCAAGGACCAATTCCTGGTGGTGGCAGTTTTGCTTCAAACATGACTAATGTGAATGAGTCAAATGTGACTTCAACTGGCCTCTGTCGTTTGTCTCAGTTAAAAGTTGCAGATTTTTCATATAACTTCATTTCTGGTAGCATACCAAAATGCTTGGAATATCTTCCAAGATCAAGCTTTCAATGCAATTGCCTCCAGAGAAAAGACATAAAGCAGCGGAGTTCTGCGTTATGTGCTGGTGCTTTAGCTTCCCAGAGCCATCCAGACGTGAACTTAACGCACCAGTCCTCTGAATCCAATCATCAAGGAGCGTCAAAACCTGCTTGGCTTTTGGCTCTTGAAATAGTGACGGGAACCATGGTCTGTGCTTTCATTGTGATTGCAATTTTCACTGCTTTCCGAAGGGGTAACAACAAAGCATCGATCATTATTCCTTGGAAAAAATCTGCAAGTGAGAAAGATCATTTTATAGTACATATAGACACTCAGCTGTTGAAGGATGTGACGATGTATAGCAGACAAGAGCTTGAAGTTGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCATCAGATAGTTTGGTCTATAAGGGTACAATCGAACGTGGACCTGAGATTGCTGTAATCTCTCTCTGCATAAAGGAAGAGTACTGGACAGGATACCTCGAGCTCTATTTTCAGAGAGAGGTGGCTGACTTGGCAAGGTTAAATCATGAAAATACTGGAAAACTACTCGGCTATTGTAGAGAGAGCAACCCATTTACGAGGATGCTGGTTTTTGACTATGCATCAAATGGGACACTTTATGAGAACCTACATTGTTATGAAGACAGGTGCCAGTTAACTTGGAGACGGCGCATGAAAATTATTATCGGAATTGCACGTGGACTCAAGTACTTGCACACAGAAATTGAGCCGCCATTCACTATCTCGGAGTTGAATTCCAATGCTGTATACCTCACAGAAGATTTTTTCCCTAAGCTGGTTGATTTTGAAAATTGGAAGACAATTCTTGAAAGATTAGAAAGAAATTCGGGTTCCATTGGGAGTCAAGGTTCTGTTTCTGTTCTTTCAAATACCAAAGCACGCCATCTCGATACCAAAGGAAATGTGTTTGCTTTTGCTGTACTTCTACTAGAGATAATCAGTGGTAGACCTCCATACTGCAAGGATAAAGGGTACTTGGTGGATTGGGCCAAGGACTATATTGAAATGCCAGAAATAATGTCACATTTGGTAGATCCTGAGTTGAAAGATTTCAGAGATGATGAACTCAAAGTAATATGTGAGGTTATAACTTTTTGTATCAGTCCTGACCCCACAGTCCATCCATCAATGCAAGAAATATGCAGCATGCTAGAGAGTAGAATTGACACATCAACAAGTGTAGATTTCAAGTCATCATCTTTGGCTTGGGCTGAACTTGCACTTTCATCATAA 1962 0.4052 MKMKLYPSLLLVGLISTLSFVASNEVLALKAFKEAVFEDPHLLLSNWNTLVSDPCDWYGVLCTPDRNHVIKINIAASSLGGFLAPELGQMIYLQELVLHDNNLVGTIPKELGMLKYLKVLDLGMNQLSGSIPAEIGNLGQIMKINLNSNGLTGRIPTELGNLKYLRELRLDRNKLQGPIPGGGSFASNMTNVNESNVTSTGLCRLSQLKVADFSYNFISGSIPKCLEYLPRSSFQCNCLQRKDIKQRSSALCAGALASQSHPDVNLTHQSSESNHQGASKPAWLLALEIVTGTMVCAFIVIAIFTAFRRGNNKASIIIPWKKSASEKDHFIVHIDTQLLKDVTMYSRQELEVACEDFSNIIGSSSDSLVYKGTIERGPEIAVISLCIKEEYWTGYLELYFQREVADLARLNHENTGKLLGYCRESNPFTRMLVFDYASNGTLYENLHCYEDRCQLTWRRRMKIIIGIARGLKYLHTEIEPPFTISELNSNAVYLTEDFFPKLVDFENWKTILERLERNSGSIGSQGSVSVLSNTKARHLDTKGNVFAFAVLLLEIISGRPPYCKDKGYLVDWAKDYIEMPEIMSHLVDPELKDFRDDELKVICEVITFCISPDPTVHPSMQEICSMLESRIDTSTSVDFKSSSLAWAELALSS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1223 653 ProSiteProfiles Protein kinase domain profile. 355 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1223 653 SUPERFAMILY L domain-like 24 230 - -
Lal16g1223 653 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 21 653 - -
Lal16g1223 653 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Lal16g1223 653 Pfam Protein tyrosine and serine/threonine kinase 358 627 IPR001245 GO:0004672|GO:0006468
Lal16g1223 653 Gene3D Phosphorylase Kinase; domain 1 331 436 - -
Lal16g1223 653 SUPERFAMILY Protein kinase-like (PK-like) 340 628 IPR011009 -
Lal16g1223 653 Gene3D Transferase(Phosphotransferase) domain 1 437 644 - -
Lal16g1223 653 PANTHER PROTEIN MALE DISCOVERER 2 21 653 - -
Lal16g1223 653 Gene3D Ribonuclease Inhibitor 139 236 IPR032675 -
Lal16g1223 653 Gene3D Ribonuclease Inhibitor 24 138 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1223 Lal-Chr16 8507910 8512339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1223 37 632 Receptor kinase-like Gene Family AT5G45780 28.571 1.01e-56 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lal16g1223 PK_Tyr_Ser-Thr 2.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1223 - - gmx:100781978 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1223 16 8507910 8512339 Lal16g1223 16 8507910 8512339 ECH
Lal16g0102 16 587387 591924 Lal16g1223 16 8507910 8512339 PCT
Lal23g1521 23 15376845 15382747 Lal16g1223 16 8507910 8512339 PCT