Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1220 ATGGCCATGACCATAGAAGATCAAGGAAATCATGATATTGGGTTCATGTGGGAAAATCAGTCATTGGGTTTCTCTGATTTTGATAAGTCAGGTGATATCAAAGAGAAGTTAGTCATTGAGAAATCGAACCAAGAAGAAGGAAATGAAGGAAAAGCTCTAATGAGTAAGAAACGAAGTAGAAGTGAAAAGAAGGTAATGACAGGAAAAGAAAAAGATGGAAAGTCTTGTAAAGTGGTTCATGAAATGCATATATTGAATGAAAGAGAAAGGAGGAAGAAGATAAAGAACATGTTTAGTACTCTTCATGCTTTTCTTCCACAACTTCCTTCTAAGGTGGACAAATTAAGCATTATTGATGAAGCAGTGGACTACATCAAATATCTAAAACAAACTTTGGAAAAGCTAGAAAAACAGAAACAAGAAAGGTTTCATTCAATCTCAGCTTTTAGGTATGAACCATCATCACATGTGATAAATTCACATTGGTATCCTATTAATAACTCAAATGAAGCATTAATAGCTGATAATGGATCTTTCAATAACTTCACCAATATAATTGGAAATCAAAACCCTTCAAATTCAATTGCAATCTCAGTCCCTCAACAACAACCACTAGCATTTCAAATATGGTCTTCTCCAAATGTAGTCTTGAATATTTGTGGAAAGGAAGCACAATTCTGCATATTTACATCTAAAAAACCAGGCCTCTTAACTGCTATAGCTTCTGTGCTAGAGAAGTTCAACATAAATGTTATATATGCCAACATAATGTGTGATGCTAATGGAAACAGATACATGATTCAAGCCCATGCAAATAGAACTACTCATCAATTAATCCTGGAGAGTACTTCTTTGGAGGAAATTTACAAGCAAGCAGCCAGAGAGATTATGCAATGGATTTCTTGA 906 0.3433 MAMTIEDQGNHDIGFMWENQSLGFSDFDKSGDIKEKLVIEKSNQEEGNEGKALMSKKRSRSEKKVMTGKEKDGKSCKVVHEMHILNERERRKKIKNMFSTLHAFLPQLPSKVDKLSIIDEAVDYIKYLKQTLEKLEKQKQERFHSISAFRYEPSSHVINSHWYPINNSNEALIADNGSFNNFTNIIGNQNPSNSIAISVPQQQPLAFQIWSSPNVVLNICGKEAQFCIFTSKKPGLLTAIASVLEKFNINVIYANIMCDANGNRYMIQAHANRTTHQLILESTSLEEIYKQAAREIMQWIS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1220 301 ProSiteProfiles ACT domain profile. 225 301 IPR002912 -
Lal16g1220 301 MobiDBLite consensus disorder prediction 40 72 - -
Lal16g1220 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 128 IPR011598 GO:0046983
Lal16g1220 301 PANTHER - 17 299 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lal16g1220 301 PANTHER TRANSCRIPTION FACTOR BHLH95 17 299 - -
Lal16g1220 301 Coils Coil 118 138 - -
Lal16g1220 301 Pfam Helix-loop-helix DNA-binding domain 82 129 IPR011598 GO:0046983
Lal16g1220 301 SMART finulus 84 134 IPR011598 GO:0046983
Lal16g1220 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 153 IPR036638 GO:0046983
Lal16g1220 301 Gene3D - 70 143 IPR036638 GO:0046983
Lal16g1220 301 CDD bHLH_AtbHLH_like 83 136 IPR045239 -
Lal16g1220 301 CDD ACT 233 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1220 Lal-Chr16 8487824 8489488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1220 14 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.768 2.03e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g1220 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1220 - - mtr:MTR_4g085700 273.478