Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1216 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGGTCAGGTTCATATTACTTACATAGAGGAGGGGTTGCAGGGTCTGGTGGGGGGTTTCCGGCGGCGGCACCCCCTCCTGGTTTTAGAGCTTTGCCAAACACTGGCATTCAAACTCAGTCAATTGCAATGACTGGTGTTGGTTCTTCTGCTTCTACATTTTCAATTGTAGAGCCTCAAACCCGTCCTGGTTTTAGTCACGATAGCGTTAGCATCGGTGGTGGTGGTGGTGCTGGTGGTGGTGCTTCTTCTGGCGGGGTACCTCCCCCTTCTTCTTCACGTGATCCTGTGAAGAAGAAAAGAGGGAGACCCCGGAAATATGCTCCTACTGATGGAGCTGTTTCTTTGAAACTTTCTCCAGTGTCTGGTGATGCTAATTGTACACCCGGTTCAATCACACCTTCGGAGAAAAAAGGTAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAGCTAGCATCTCTAGGTGAATGGATGAACAGTTCAGCAGGGCAGGCTTTTACGCCTCATGTTATCTCCATTGGAGTTGGGGAGGACATCGTAGCAAAGTTATTGTCGTTATCGCAGCAGAGACCAAGGGCTCTTTGCATCTTATCGGGCACTGGGACAGTTTCTTCAGTTACTCTGCGGCAGCCTGCTTCTACCAATGCCAGCATAACTTTTGAGGGCCGATTCCAAATATTATGCTTGTCTGGCTCCTACTTGGTAGGTGAAGATGGTGGACCCTCCAATAGAAAAGGTGGCATAAGTGCTTCCCTTTCTAGCCCTGATGGTCATGTTATTGGTGGCAGTGTTGCTGTGCTTATTGCTGGGAGCCCAGTGCAGGTGGTAGTGTGCAGTTTCCAATATGGTGGTAACAAGACTAAGCAAGAGACTACTACCAAAGATGACGATAGTTCTGAGCCTCAGGGTAATGACAAGTTATCTTCTCCAGCCAGTGCTCCTCCGGCTCGTCAAAACTACATCCCTTCTGCGGCAGGCATGTTGCCTGGATCGCAATCAGAAGACGTGAAAAGCGAACAAATGCATACAGGCATTGACTTAACGCGTGGGTGA 1086 0.4972 MDGREAMAFSGGSGSYYLHRGGVAGSGGGFPAAAPPPGFRALPNTGIQTQSIAMTGVGSSASTFSIVEPQTRPGFSHDSVSIGGGGGAGGGASSGGVPPPSSSRDPVKKKRGRPRKYAPTDGAVSLKLSPVSGDANCTPGSITPSEKKGRGRPPGSGRKQQLASLGEWMNSSAGQAFTPHVISIGVGEDIVAKLLSLSQQRPRALCILSGTGTVSSVTLRQPASTNASITFEGRFQILCLSGSYLVGEDGGPSNRKGGISASLSSPDGHVIGGSVAVLIAGSPVQVVVCSFQYGGNKTKQETTTKDDDSSEPQGNDKLSSPASAPPARQNYIPSAAGMLPGSQSEDVKSEQMHTGIDLTRG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1216 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 179 292 IPR005175 -
Lal16g1216 361 Gene3D - 179 308 - -
Lal16g1216 361 ProSiteProfiles PPC domain profile profile. 174 313 IPR005175 -
Lal16g1216 361 MobiDBLite consensus disorder prediction 297 361 - -
Lal16g1216 361 MobiDBLite consensus disorder prediction 69 163 - -
Lal16g1216 361 SMART AT_hook_2 147 159 IPR017956 GO:0003677
Lal16g1216 361 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Lal16g1216 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 361 IPR039605 GO:0003680
Lal16g1216 361 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 361 - -
Lal16g1216 361 CDD DUF296 178 291 IPR005175 -
Lal16g1216 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 175 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1216 Lal-Chr16 8472536 8476545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1216 1 361 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.724 3.02e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1216 - - gmx:100798706 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1216 16 8472536 8476545 Lal16g1216 16 8472536 8476545 ECH
Lal16g1216 16 8472536 8476545 Lal15g1384 15 16004159 16007742 LSH
Lal16g0099 16 572389 576387 Lal16g1216 16 8472536 8476545 PCT