Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1215 ATGATTTATAGGGTTGGAATGGGTTGTGACTTTTCAAAGTACATTGTATGCTGCTGGAGTACAGAGCAGCAGCAAGATCGTCCGGTTCCTGAGGTTCAAGATGATGAAAATGAAGACAATAATGAGGGCAGTGATTTGTTACCATTTCATGAATTCACATTTGGTCAGCTGAAGAATGCTACATCTGGATTTGCAGCGGAAAATATAGTTTCTGAGCATGGAGAGAAGGCACCAAATGTGGTCTATAAAGGAAAACTTGAAAACCAAATGCGAATTGCTGTGAAACGGTTCAACAGATCAGCCTGGCCAGATGTCCTGCAATTTTTATCAGCTGCATCATCTTCCCTACTACACAGTAAACATAACCATTTCTACTTTCGTGTGATCTACAGCTTGGGCATAGTGTGTCAAATCTTCTTCCCCACACGTGTAAAGGTGAGCCTTGGCACAACAGTGAAGTTGCTGCTTAGTGACCAAGAGGTCACGGGTTCAAATCTTGGAAATAGCCTCTCCGCTTGTGGTACAGAGGCCAGGTCTGTTGGTCAACTAAGGAACCAAAGATTGGCAAATCTGCTTGGATGTTGCTGTGAAGGTGAAGAGAGGTTACTTGTTGCAGAATATATGCCCAATGACACTTTGGCAAAGCATTTGTTCCACTGGGAAACTCAGCCCATGAAATGGGCAATGCGACTGAGAGTTGCTTTGTACCTTGCCCAAGCTCTAGAGTACTGTACTAACAAAGGACGTGATCTATATCATGATCTAAATGCTTACAGAGTTCTTTTCGATGATGAATACAATCCTAGACTTTCATGCTTTGGTTTGATGAAAAACAGTAGAGATGGGAAAAGTTATAGTACAAATTTGGCATTTACTCCACCTGAGTATCTGAGGACAGGTAGACTTACACCAGAGAGTGTAACATACAGCTTTGGGACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATCCCTCCAAGTCATGCTCTTGACCTGATAAGGAACAGGAACCTTCCAATGCTAACAGACTCTTGTTTAGAAGGACAATTTACAAATGATGAGGGGACAGAATTACTTCGTCTGGCCTCACGATGTTTGCAATCTGAACCGCGAGAGCGTCCTAATTCAAAGTCATTGGTCACTGCTCTTATACCTCTGCAGAAGGATACGGAGGTTCCTTCTCATGTGCTGATGGATATACCAGATGACAATGCTGCAGCTCCCCTTTCTCCGCTTGGTGAAGCTTGTCAACGGATGGATCTTACTGTCTTACATGAGGTGATAGAGAAACTTGGGTATAAAGATGATGATGGGACAGAGACTGAGCTTTCATTCCAAATGTGGACAAATCAGATGCAGGAGACATTGAATTCGAAGAAGAAAGGGGATGCTGCTTTTCGGAAGAAGGACTTTAAAACTGCTATTGATAGATATACACAGTTCATCGAGGTTGGAACAATGGTTTCGCCGACAATTTATGCACGCCGCAGTCTGTCATATCTCATTAACAATATGCCAGAAGTAGCACTTACTGATGCGCTGCAGGCACAAATAATATATCCTGTTTGGCACATAGCATCTTATTTACAAGCTGTCTCTCTTATAGCACTCGGCAGGGATCGTGAAGCCCGAATGGCACTTAAAGAGGGTACTTCACTTGAAACTAAAATGAACACAGATAAGTAG 1686 0.4282 MIYRVGMGCDFSKYIVCCWSTEQQQDRPVPEVQDDENEDNNEGSDLLPFHEFTFGQLKNATSGFAAENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRSAWPDVLQFLSAASSSLLHSKHNHFYFRVIYSLGIVCQIFFPTRVKVSLGTTVKLLLSDQEVTGSNLGNSLSACGTEARSVGQLRNQRLANLLGCCCEGEERLLVAEYMPNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTNKGRDLYHDLNAYRVLFDDEYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRLTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRNRNLPMLTDSCLEGQFTNDEGTELLRLASRCLQSEPRERPNSKSLVTALIPLQKDTEVPSHVLMDIPDDNAAAPLSPLGEACQRMDLTVLHEVIEKLGYKDDDGTETELSFQMWTNQMQETLNSKKKGDAAFRKKDFKTAIDRYTQFIEVGTMVSPTIYARRSLSYLINNMPEVALTDALQAQIIYPVWHIASYLQAVSLIALGRDREARMALKEGTSLETKMNTDK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1215 561 PANTHER TPR DOMAIN KINASE 7 114 - -
Lal16g1215 561 PANTHER TPR DOMAIN KINASE 175 559 - -
Lal16g1215 561 Gene3D Tetratricopeptide repeat domain 453 561 IPR011990 GO:0005515
Lal16g1215 561 Gene3D Transferase(Phosphotransferase) domain 1 209 401 - -
Lal16g1215 561 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 175 559 IPR045845 GO:0004672|GO:0009742
Lal16g1215 561 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 7 114 IPR045845 GO:0004672|GO:0009742
Lal16g1215 561 Gene3D Phosphorylase Kinase; domain 1 159 207 - -
Lal16g1215 561 Gene3D Phosphorylase Kinase; domain 1 37 126 - -
Lal16g1215 561 SUPERFAMILY TPR-like 459 554 IPR011990 GO:0005515
Lal16g1215 561 Pfam Protein tyrosine and serine/threonine kinase 172 383 IPR001245 GO:0004672|GO:0006468
Lal16g1215 561 ProSiteProfiles Protein kinase domain profile. 67 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1215 561 SUPERFAMILY Protein kinase-like (PK-like) 43 393 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1215 Lal-Chr16 8459050 8467354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1215 183 383 Glycoside Hydrolase AT3G07070 35.874 2.32e-32 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lal16g1215 PK_Tyr_Ser-Thr 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1215 K14500 - gmx:100797107 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1215 16 8459050 8467354 Lal16g1215 16 8459050 8467354 ECH
Lal16g1215 16 8459050 8467354 Lal15g1385 15 16013474 16020012 LSH