Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1210 ATGTATAATTTTGTCTACTGTTCTGAAAAAAACAAGGAGATGGAGATGGAGATGGTTCCAGAGAACATGAAGAAACAACTTTCTTTGGTTGTGAGAAGCATACAGTGGATATATGCAATCTTTTGGTCTAGTTCAGCTACCAATCCTGGGGTCTTGAGCTGGGGGGAAGGATATTATAATGGAGACATTAAGACTAAAAAAGCAAATCAAGGAGTAGAACTTAATTCTGATGAAATAAGCTTACAGAGAAGTGAGCAATTGAGAGAGCTATTCAGGTCCTTCAAAACTACAGAAGCAACAAAAAAGCCTTCAGCAACACTGTCCCCTGAAGATCTCACAGATACTGAGTGGTATTATTTGGTTTGCATGTCCTTTGTATTCAACAATGGAGAAGGGTTACCAGGAAGAAGTCTAGCAAATGATCAACCTATTTGGTTGTGCAATGCCCATTCTAGTGATTGTATACTTTTCCGTCGGTCTCTGTTGGCTAAGACAGTGGTGTGCTTTCCGTTTATGGATGGGGTTATCGAGCTAGGTACAACTGATCTTGTGCCAGAGGATCTTAGTCTCATTCAACAGATCAGAACTTCTTTCTTGAATATTTTGGAATCCAGTGTTCCTAAAAAGGATGGAGCTGCATTGAACATGAGAAATGAGGAAGAAGTTGCTGATAAAAATGCTTATAATGCTAAATCAACTGCAGAAGTAGGAAATGAAGTAATGAACATAACATCTCCTAATAGTTCATATGCATTACAAGGCAATCAACCATCAGAAGAAATATTGATAGCTGAAATGGTTAATGGTGGTATCTCTACAGTACAAAGCTGGCAAGTTTCGGATGACGAATTAAGCAACTGCATCCATAATGCCATGAATTCTAGTGACTGTATATCTCAAACTTTTGCCAGTCCTGAGAAGATTGCTTATGTTGCCAACGGTGAAAATTGCAATGATCATTGTGCAAGAGATCTTCAAAAGTTCAATAACCCAGAAATGACCTTAGTGGATCCTCAAAGAGATGATTGGCATTATCAGAGTGTTCTTTCAACCCTTCTAAAAAGCTCAGACCAGTTAACTATGGGAACACATTTCCAAAATTTTCATCAGGTATCAAGCTTTGTCAGTTGGAAGAAAGGAGGGCCAATGGATTGCCAAAGGCCGAGAGCACGAAACTCGAAAAATTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCATTTGGAGGGGTTGCTTGAGTCTCAAGAAGAGAATGATGATAAAGATGGAATGAGACAAGAGGTAGATGGAAATGGCATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCGAAACTAAACGAAAGGTTTTTAACGCTTAGATCAATGGTCCCCTCAACTAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATAGAATACCTCACAAAGCTCGAGAAAAGGTTAAGAGAGTTGGAAGCTCAAAGGGAGATAATAGATATAGAGGCTAGAACTAAAAGGTCACCTCAAGATATGGTAGAGAGGACTTCTGATAACTATTTTAACAAAACTGATAATGGCAAGAAGCCGGTCGTTAAAAAGAGGAAGGTTTGTGATATTGATGCGGCTCGAGTAGAGATCAATTTAGATGCTCTTAATGGTAGTTCTACTAATGATGTTACTGTCACTGTGAGTGGCAATGAAGTTGTAGTTGAATTGAAGTGTCCTTCAAGAGAAGGAAGGGTGCTAAAAATTATGGAAGCAATTAGCTCTCTCAATTTAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGAATTCTTTATATGACCATTAAATCTAAGCTAAATGGACCAGCTATTGTATCAGCAAAAAAGATCAAACAATCACTCCAAAGAGTGGCTTCCAAGCGTTGA 1902 0.3843 MYNFVYCSEKNKEMEMEMVPENMKKQLSLVVRSIQWIYAIFWSSSATNPGVLSWGEGYYNGDIKTKKANQGVELNSDEISLQRSEQLRELFRSFKTTEATKKPSATLSPEDLTDTEWYYLVCMSFVFNNGEGLPGRSLANDQPIWLCNAHSSDCILFRRSLLAKTVVCFPFMDGVIELGTTDLVPEDLSLIQQIRTSFLNILESSVPKKDGAALNMRNEEEVADKNAYNAKSTAEVGNEVMNITSPNSSYALQGNQPSEEILIAEMVNGGISTVQSWQVSDDELSNCIHNAMNSSDCISQTFASPEKIAYVANGENCNDHCARDLQKFNNPEMTLVDPQRDDWHYQSVLSTLLKSSDQLTMGTHFQNFHQVSSFVSWKKGGPMDCQRPRARNSKNLLKKVLFEVPRMHLEGLLESQEENDDKDGMRQEVDGNGMNHVLSERRRRAKLNERFLTLRSMVPSTSKDDKVSILDDAIEYLTKLEKRLRELEAQREIIDIEARTKRSPQDMVERTSDNYFNKTDNGKKPVVKKRKVCDIDAARVEINLDALNGSSTNDVTVTVSGNEVVVELKCPSREGRVLKIMEAISSLNLDFNSVQSTEADGILYMTIKSKLNGPAIVSAKKIKQSLQRVASKR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1210 633 PANTHER TRANSCRIPTION FACTOR EGL1 15 629 - -
Lal16g1210 633 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 23 198 IPR025610 -
Lal16g1210 633 Gene3D - 423 496 IPR036638 GO:0046983
Lal16g1210 633 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 431 480 IPR011598 GO:0046983
Lal16g1210 633 Pfam Helix-loop-helix DNA-binding domain 435 481 IPR011598 GO:0046983
Lal16g1210 633 SMART finulus 437 486 IPR011598 GO:0046983
Lal16g1210 633 Coils Coil 470 497 - -
Lal16g1210 633 PANTHER TRANSCRIPTION FACTOR TT8 15 629 - -
Lal16g1210 633 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 434 495 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1210 Lal-Chr16 8413309 8417823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1210 19 630 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 44.292 1.83e-171 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g1210 bHLH-MYC_N 3.2e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1210 - - gmx:100808167 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1210 16 8413309 8417823 Lal16g1210 16 8413309 8417823 ECH
Lal16g1210 16 8413309 8417823 Lal15g1391 15 16085968 16091286 LSH