Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1200 AAAAAGAAGAAGAAGAAGAAGAAGAAGATCTATTGCAACATAAGAGTTGAAAAAAGTAAGGCTAATTTCATGGCTAGACAAGTGTGTGAAGATAAATCAAGGGACATGGCTACATCAAATGGACTCTGCTACTCAGATATATCATCAAATAATCCAACAATTCATCAAACCCATCTATTGAACCAGATCCAAGGGTTTGTGACAGACCCAGAGATGTTCAACCTCACCACAAACATGGGGATGATAGGGTTTTCCAAGAATTATCTTCATCAACAAAGTTTCTTCAACAAACTTAATCAACAACACCATGGTCCTCCTTCATCTTCCAAGACAATGAATAAGTCTTCTAACACTTTCTATCATCAAGAGTATAATACTAATAAACCAGATTTCATACCAGGAATTTCGGAAACAAGTAGTGATAATCACCTAATCTTGAGTGCTCGTGATTCTGTTTCTGCCAGGTTGCAAGAGAATAGAACATCATTACTTGTTGATGATTCTTCTTTGAGGTATGTGTTCCCTTCTGAAGGTAATAACCTTAGTCAAAGACTAAGTGAAGGCCTTTCACTCTCTCTTAGTTCAAACAATATTGGGTTGCAATCTTTTGAGCTAAGACACCAACAACAACAGCAACCAGATTTTGCATCTTCATCAAGTTCTAGAGAAGGGTTCTATTCAAAATCATATCAACAACAACGAATGATGCAGCAAGGTGCTAATATTTATCAAGGACATTTCATGCTCAAGAATTCTAAGTTCTTGGTACTTGCACAGGAACTTCTGAATGAGTTTTGTAGTTTAAAAACAAAACAAAACGATGTAGTAAAGCAAAAATCTCATCAGAAGAACCTACAATCATTTGAAGAGGATCCAAAGACTAATAATTCTCTTACCTCCCTTGAATTCTTGGAACTGCAGAAGAGAAAGACAAAACTGCTTTCTATGCTGGAAGAGGTTGATAGAAGATACAGGCACTACCGGAATCAAATGAAGGTTGTGGTGTCTTCATTTGAAGCAGTGGCTGGAAGTGATGCTGCCACAGTGTACTCAGCATTAGCTTTGAAGGCCATGTCAAGACACTTTAGGTGTTTGAAGGATGGGATTTTGGATCAGGTTCAAGCTACAAAGAAAGCCATGGGAGAAAAAGAAGCAACTGCACTAGACATAACAAAGGGTGAAACACCAAGGCTTAAAATTCTTGACCAAACACTTAGACAACAAAGAACATTCCAACAACTGAACATGATGGAAACACATCCTTGGAGACCCAAACGTGGCCTTCCTGAAAGATCTGTCTCCATTCTTCGTTCTTGGCTTTTTGAACATTTTCTCAATCCGTACCCAAGTGATGTTGATAAACATATTTTAGCCCACCAATCTGGTCTCTCAAGAAGCCAGGCATGTCCCTATCTTCCTTAA 1422 0.3819 KKKKKKKKKIYCNIRVEKSKANFMARQVCEDKSRDMATSNGLCYSDISSNNPTIHQTHLLNQIQGFVTDPEMFNLTTNMGMIGFSKNYLHQQSFFNKLNQQHHGPPSSSKTMNKSSNTFYHQEYNTNKPDFIPGISETSSDNHLILSARDSVSARLQENRTSLLVDDSSLRYVFPSEGNNLSQRLSEGLSLSLSSNNIGLQSFELRHQQQQQPDFASSSSSREGFYSKSYQQQRMMQQGANIYQGHFMLKNSKFLVLAQELLNEFCSLKTKQNDVVKQKSHQKNLQSFEEDPKTNNSLTSLEFLELQKRKTKLLSMLEEVDRRYRHYRNQMKVVVSSFEAVAGSDAATVYSALALKAMSRHFRCLKDGILDQVQATKKAMGEKEATALDITKGETPRLKILDQTLRQQRTFQQLNMMETHPWRPKRGLPERSVSILRSWLFEHFLNPYPSDVDKHILAHQSGLSRSQACPYLP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1200 473 Pfam Homeobox KN domain 439 467 IPR008422 GO:0003677|GO:0006355
Lal16g1200 473 Gene3D - 428 469 - -
Lal16g1200 473 SUPERFAMILY Homeodomain-like 415 467 IPR009057 -
Lal16g1200 473 SMART prehox3 243 371 IPR006563 -
Lal16g1200 473 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 24 470 - -
Lal16g1200 473 Pfam Associated with HOX 248 369 IPR006563 -
Lal16g1200 473 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1200 Lal-Chr16 8261263 8264443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1200 174 472 Homeobox Transcription Factor Family AT5G41410 49.112 7.37e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1200 - - gmx:100787954 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1200 16 8261263 8264443 Lal16g1200 16 8261263 8264443 ECH
Lal16g1200 16 8261263 8264443 Lal15g1411 15 16254899 16259853 LSH
Lal16g0091 16 531005 536325 Lal16g1200 16 8261263 8264443 PCT
Lal23g1534 23 15485835 15492121 Lal16g1200 16 8261263 8264443 PCT