Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1195 ATGATCATCTCAGAGAAGAACCGTAAGGAGATCTCCAAATACCTCTTTCAAGAGGGAGTCTGCTATGCTAAGAAGGACTTTAATTTGGCCAAACACCCGGAAATCGATGTTCCGAATCTTCAGGTGATTAAGCTGATGCAGAGTTTTAAATCTAGGGAGTATGTGAGGGAGACATTTGCATGGATGCACTATTATTGGTTCCTTACCAATGATGGGATTGAATTCCTTAGGACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACTTTGAAGAAACAAGCTAAGCCCCTTGGAAGACCCTTTGGTGGCCCACCGGGTGATCGCCCAAGGGGTCCACCTCGATTTGAGGGAGGAGAACGTAGATTTGGTGGTGACCGTGATTCATACCGCAGAGGTCCACGAGGACCTGATGAAGTTGGAGGAGACAAGGGAGGAGCTCCTGCAGACTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGATCTGGCTTTGGTCGTGGTTCTGGGGCCCCAACAAGCTCAAATCTTTCTTAA 534 0.4813 MIISEKNRKEISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPLGRPFGGPPGDRPRGPPRFEGGERRFGGDRDSYRRGPRGPDEVGGDKGGAPADYRPSFGGPGGRSGFGRGSGAPTSSNLS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1195 177 Gene3D - 1 104 IPR036388 -
Lal16g1195 177 Pfam Plectin/S10 domain 3 94 IPR005326 -
Lal16g1195 177 PANTHER 40S RIBOSOMAL PROTEIN S10 1 170 IPR037447 -
Lal16g1195 177 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 1 170 - -
Lal16g1195 177 MobiDBLite consensus disorder prediction 93 177 - -
Lal16g1195 177 MobiDBLite consensus disorder prediction 113 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1195 Lal-Chr16 8232471 8234145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1195 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 83.226 1.41e-76 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1195 K02947 K09422 gmx:100500445 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1195 16 8232471 8234145 Lal16g1195 16 8232471 8234145 ECH
Lal16g0088 16 524423 526725 Lal16g1195 16 8232471 8234145 PCT
Lal15g0065 15 450136 451881 Lal16g1195 16 8232471 8234145 PCT
Lal23g1537 23 15508506 15512886 Lal16g1195 16 8232471 8234145 PCT