Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1194 ATGGGTCACCATTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATTAGATATATTGCCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGAAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACATGAGGAGGAGAAGTTAATTATAAGCCTTCATGGTGTAGTAGGCAACAGATGGGCTCACATTGCAAGTCACTTACCTGGTAGAACTGACAATGAAATTAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTTGGGTGTCCTCAAACTCCAACATTGCAAAAGGTGTTGACCATCATTCACAGTTCAATTACCATTCTAATCAACTTGATCATTATTCCAATTGCAAGCAAGAAAATCTAACAACAAAGCCACCACCAGTTCAAGAAACCTTATTCTCTTCATCAACATGCCCCCAATTTATGTTTGACACTAGTTCACTAGATCATGGGATAACAACCTTAACAGACAATAGTCTAAGACCTGAACTCTTCCATAGTACTGTGGGTTTGAGCACAGAAACATGGAACTTAAGCCAGCATCATCAAGTGCATGCACCTTTTACTGCTGGCATGGACAACACCAATTATCTGCCACCATTGATAGAGAATGTGGAGAACATGGTGCCATTTGAAGTACAATCATGTAGCATGAATGACAAAGGAGAAGTTGCACTAGAGTGCCTGCAGAGGCAAGAGTTGAATGAATGGGTAGAAATCCAACAACAACAGTGTCCTAACTTCCTTTTCTGCTGGGATAATGTTGAAGGACAACCTAGTGGGGAAGAACTTACACCAAATTTATCAAATATGGGAACAAATACACTTCCTTCTTTTCCCTAA 945 0.4053 MGHHSCCNQQKVKRGLWSPEEDEKLIRYIATHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTHEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPWVSSNSNIAKGVDHHSQFNYHSNQLDHYSNCKQENLTTKPPPVQETLFSSSTCPQFMFDTSSLDHGITTLTDNSLRPELFHSTVGLSTETWNLSQHHQVHAPFTAGMDNTNYLPPLIENVENMVPFEVQSCSMNDKGEVALECLQRQELNEWVEIQQQQCPNFLFCWDNVEGQPSGEELTPNLSNMGTNTLPSFP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1194 314 CDD SANT 69 112 IPR001005 -
Lal16g1194 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal16g1194 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal16g1194 314 CDD SANT 17 61 IPR001005 -
Lal16g1194 314 PANTHER MYB DOMAIN PROTEIN 55 1 314 - -
Lal16g1194 314 SMART sant 66 114 IPR001005 -
Lal16g1194 314 SMART sant 13 63 IPR001005 -
Lal16g1194 314 Gene3D - 68 138 - -
Lal16g1194 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal16g1194 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal16g1194 314 Gene3D - 6 66 - -
Lal16g1194 314 PANTHER MYB TRANSCRIPTION FACTOR 1 314 - -
Lal16g1194 314 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal16g1194 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal16g1194 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1194 Lal-Chr16 8228029 8231010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1194 1 301 MYB Transcription Factor Family AT1G63910 49.862 9.43e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal16g1194 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1194 K09422 - gmx:100797787 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1194 16 8228029 8231010 Lal16g1194 16 8228029 8231010 ECH
Lal16g1194 16 8228029 8231010 Lal15g1413 15 16272262 16274995 LSH
Lal15g0064 15 447195 449504 Lal16g1194 16 8228029 8231010 PCT