Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1186 ATGGATGAGCTTGCATACTTCATGGATTGGGATTTGGAAGCTATTGTGAGAGGAAGAACCAATGAAACAGCACCATCTTCAGCCACCATAATGGAGAACCCATATCTTAATTTATCTGAATTTTGTTCTGAACAAGATGAGATACTTTGGAATTTCCCTGAATTCTCAGAAACCACAAAGGTCCTTGATGAATTGGAAGACCTTTATAAACCATTTTACCCAGTTTTGCATCCTCTTTCTACCCAGAACATGATCACAAGTAATTCCCTACCTATCACCAAAGAACCCCAACAATTCAAAGTGTTTAAATCATCAGAGGAAATAACTCCACATGATCAAGTTCCCATAGTATCCAAATCTAGAAAAAGTAAAAAGAACAAGGTGGTGAAGCAAGTAACAGCAGAAACTAGCATTTGTGATTCATGGGCATGGCGAAAATATGGACAGAAACCAATCAAAGGTTCACCTTATCCTCGAAGCTACTACAAGTGCAGCACTTCTAAAGGATGCTTAGCTAGGAAACAAGTTGAAAGAAGCCATTTGGACCCTCAAGTTTTCTTGATTACCTACACTGCAGAACATAGCCATCCCCACATAGCTCCCAGAAACTCATCACTAGCAGGTAGAACAAGGAAGAACAACAATTCTATAGTTGCATCTCAAAATATTCTTGACCAAAAAAGCACTTGTTCTTCAAGCTCCTCAGCAGTGATTCTCTCTCAAAATACACCTTTAGATGAGGTTGAGATGGTGACAAGTTTGGAACAAAGTAAGGGCTTGGCGAAAGAAGAAGATTTTCTTGAGTTGTTGGATGAGGCTGAATTAGGTCATGGCTGGTTTTCAAACACAGAGCTAGAGGAACTGATAGGGGATTTTACCAGCAACTTGAGTTAG 894 0.396 MDELAYFMDWDLEAIVRGRTNETAPSSATIMENPYLNLSEFCSEQDEILWNFPEFSETTKVLDELEDLYKPFYPVLHPLSTQNMITSNSLPITKEPQQFKVFKSSEEITPHDQVPIVSKSRKSKKNKVVKQVTAETSICDSWAWRKYGQKPIKGSPYPRSYYKCSTSKGCLARKQVERSHLDPQVFLITYTAEHSHPHIAPRNSSLAGRTRKNNNSIVASQNILDQKSTCSSSSSAVILSQNTPLDEVEMVTSLEQSKGLAKEEDFLELLDEAELGHGWFSNTELEELIGDFTSNLS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1186 297 ProSiteProfiles WRKY domain profile. 133 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g1186 297 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 9 262 IPR044810 GO:0003700
Lal16g1186 297 Pfam WRKY DNA -binding domain 140 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g1186 297 Gene3D WRKY domain 121 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal16g1186 297 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 9 262 - -
Lal16g1186 297 SUPERFAMILY WRKY DNA-binding domain 135 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal16g1186 297 SMART WRKY_cls 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1186 Lal-Chr16 8155791 8157557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1186 1 211 WRKY Transcription Factor Family AT4G23550 45.217 6.61e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal16g1186 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1186 K13426 - gmx:102663255 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1186 16 8155791 8157557 Lal16g1186 16 8155791 8157557 ECH
Lal16g1186 16 8155791 8157557 Lal2g0952 2 6378966 6380798 ECH
Lal16g1186 16 8155791 8157557 Lal9g0840 9 6133025 6134809 ECH
Lal16g1186 16 8155791 8157557 Lal6g0997 6 7112653 7114535 ECH
Lal16g1186 16 8155791 8157557 Lal22g0891 22 6973640 6975543 ECH