Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1178 ATGGAACAGAAAAGCCTTTTGATATCAGCACTAAGTGTAGGAGTGGGAGTAGGAGTGGGATTAGGATTGGCTTCAGGACAAAGTGTTACTAAATGGGGAGTGAATAATTCTTCTTCAAATTCAATTACTGCTGAGAAGATAGAACAAGAAATGCTAAGACAAGTTATTGATGGAAGAGAAAGCAATGTCACTTTTGATAAATTCCCTTATTATCTCAGGCATAAGGTTTCTAAATATACGCGTAATCTTGCTCCTGCAAGCCAAACTATTTTGCTTTCTGGGCCAGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTCGATGCGAAGTTGCTTCTGTTAGATTTAACCGATTTTTCATTGAAGATTCAGAGTAGATATGGATCTTCTAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGACGACTTTGGAGCGATTATCCGACTTATTTGGGTCATTTTCAATCTTTTCACAGAAGGAGGAACCTAAAGTGAAAATGCATAGGCAAGGTAGTGGAGTGGACCTTCAATCAATGGGGACTGAAGCATCTAGTAATCCTCCAAAACTCCGTAGAAATGCTTCTTCCTCTTCAAGTATTGCAAGCCTTGGTATGCAAAGCAATACTACAAATCCAGCTCCTCTGAGGCGCACATCCAGTTGGTCTTTTGATGAAAAGCTTCTTATACAGACTCTCTATAAGGTTCTGGTTTTTGTGTCGAAAACCTTTCCCGTTGTGCTATATCTGCGGGATGTTGATAACTTGTTACATAGATCGCAGAGGATATATAAACTGTTCCAGAAAATGTTGGAGAAACTATCTGGACCAATTTTGATTCTCGGTTCACGAGTTCTGGATTCTAGTAATGACTATGCAGAGGAAGACGAGAAGCTTGCTTCGCTCTTTCCATACAACATAGAAATCAGGCCACCGGAAAGTGAATCACATCTTGTCAGCTGGAAGTCTCAGTTAGAAGAGGATATGAAGAGGATACAAGTTCAGGATAACAGGAACCATATCATAGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTGGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATCGTGTCTGCGATTTCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGGAAACTTGTTATTTCCGGCAAAAGTTTGTCCCATGCTTTGAGCATATTCCACAAGGGAAAATTCAGTGGAAGTGATACATCAAAATTGATTGATCAAGCAGTAAAACCCGAGATGCAAAAAGGGGAAGAAAATGTTGTGAAACCAGAAGCAAAGTCTGAAATTGCTGCTCCTGTAAAAAAGGCTGAAACAGGACCAACTTCAGTGGGAAAAACAGACAGTGAAAAATCAGTTCCAGCATCCAAATCTTCTGAAGTTCCTCCTGATAACGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAAGGAGATTAATGTGACATTCTCTGACATCGGTGCCTTAGATGAGACAAAAGAATCACTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCGGACCTTTTCACCGGAGGACTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGACCACCAGGCACTGGGAAGACGATGCTGGCGAAGGCAATTGCAAAGGAGGCTGGAGCAAGTTTCATCAATGTATCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTGTTCACACTTGCAGCCAAGGTTTCCCCAACTATTATTTTTGTGGATGAGGTTGATAGCATGCTTGGACAAAGGACCAGAGTAGGAGAACATGAAGCCATGAGGAAAATAAAGAATGAATTTATGAGTCATTGGGATGGGCTTATGACAAAACCGGGAGAGCGCATCCTCGTTCTTGCAGCAACCAATAGGCCATTTGACCTTGATGAAGCTATTATTAGGCGATTCGAAAGGAGAATTATGGTAGGGCTACCATCTGTGGAGAACAGAGAAAAGATTTTAAGGACTCTTTTGGCAAAAGAACATGTAGATGAGGAAGTTGATTTTAAGCAACTGGCAACTATAACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAACTGCAGCTTATCGACCTGTTAGAGAGTTAATTGCCCAAGAGAGGCTCAAAAATATGGATAAGAAGCAGAAAGATAAAGCTGCCAAGGAACAAAATAAAGATGTTCAAGACAGAAACAATAAGGATGTTGTGGATACAGAACAGGAAAGAGTTATCACCCTTAGGCCATTGAATATGCAGGATTTCAAAGAGGCAAAGAATCAGGTTGCTGCAAGCTTTTCAACTGAAGGGGCTGGAATGAGTGAGTTGAAGCAGTGGAACGAATTGTATGGGGAAGGTGGTTCAAGGAAACAAAAGCAGTTGTCTTACTTCTTATGA 2478 0.406 MEQKSLLISALSVGVGVGVGLGLASGQSVTKWGVNNSSSNSITAEKIEQEMLRQVIDGRESNVTFDKFPYYLRHKVSKYTRNLAPASQTILLSGPAELYQQMLAKALAHYFDAKLLLLDLTDFSLKIQSRYGSSNKESSFKRSTSETTLERLSDLFGSFSIFSQKEEPKVKMHRQGSGVDLQSMGTEASSNPPKLRRNASSSSSIASLGMQSNTTNPAPLRRTSSWSFDEKLLIQTLYKVLVFVSKTFPVVLYLRDVDNLLHRSQRIYKLFQKMLEKLSGPILILGSRVLDSSNDYAEEDEKLASLFPYNIEIRPPESESHLVSWKSQLEEDMKRIQVQDNRNHIIEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISYHLMKNKDLEYRNGKLVISGKSLSHALSIFHKGKFSGSDTSKLIDQAVKPEMQKGEENVVKPEAKSEIAAPVKKAETGPTSVGKTDSEKSVPASKSSEVPPDNEFEKRIRPEVIPAKEINVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEHVDEEVDFKQLATITEGYTGSDLKNLCTTAAYRPVRELIAQERLKNMDKKQKDKAAKEQNKDVQDRNNKDVVDTEQERVITLRPLNMQDFKEAKNQVAASFSTEGAGMSELKQWNELYGEGGSRKQKQLSYFL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1178 825 SMART AAA_5 540 677 IPR003593 -
Lal16g1178 825 SMART AAA_5 86 317 IPR003593 -
Lal16g1178 825 MobiDBLite consensus disorder prediction 436 453 - -
Lal16g1178 825 CDD AAA 542 675 - -
Lal16g1178 825 Gene3D - 502 675 IPR027417 -
Lal16g1178 825 MobiDBLite consensus disorder prediction 463 480 - -
Lal16g1178 825 MobiDBLite consensus disorder prediction 436 488 - -
Lal16g1178 825 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Lal16g1178 825 MobiDBLite consensus disorder prediction 172 221 - -
Lal16g1178 825 MobiDBLite consensus disorder prediction 738 764 - -
Lal16g1178 825 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 825 - -
Lal16g1178 825 Pfam AAA+ lid domain 698 739 IPR041569 -
Lal16g1178 825 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 825 - -
Lal16g1178 825 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
Lal16g1178 825 Gene3D - 676 756 - -
Lal16g1178 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 786 IPR027417 -
Lal16g1178 825 MobiDBLite consensus disorder prediction 179 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1178 Lal-Chr16 8068431 8074728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1178 491 736 Calmodulin-binding Proteins AT3G56690 37.402 6.02e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1178 - - gmx:100807464 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1178 16 8068431 8074728 Lal16g1178 16 8068431 8074728 ECH