Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1171 ATGAACGACTCTGATGTCTCCAAGCAAATAGATCAGATGGTGAGATTTATCCGCCAGGAAGCAGAAGAAAAAGCCAACGAGATCTCTGTTTCTGCTGAAGAAGAATTCAACATTGAGAAACTTCAATTGTTGGAGGCTGAGAAGAAGAAGATCAGACAGGAATATGAGCGCAAAGAGAAACAAGTTGATATTCGGAAGAAGATTGAGTACTCAATGCAGCTGAACGCTTCTCGGATAAAAGTTCTCCAAGCTCAAGATGATGTGGTTAATTCCATGAAAGAAGCTGCTTCCAAGGAACTTTTGAGTCTGAGCAACTATGATACTGTGTACAGGATCCTTCTGAAAGATCTCATTGTCCAGAGTTTGCTAAGGCTGAAAGAACCTTCTGTCATATTGAGATGTCGGGAAGATGACCTGCACTTGGTAGAGGAAGTGCTGGATTCAGCTGCACAGGAGTATTCTGACAAAGAAAATGTATATCTACCAGAGATCATTGTTGACAACAATGTCTTTCTTCCACCTGCACCCAGCCATCACAATGTTCATGACCTCCACTGCTCTGGTGGGGTGGTGCTGGCTTCTCGAGATGGAAAGATTGTGTTTGAAAATACTCTTGATGCACGCCTGGATGTATTGTTCCGTAGCAAACTTCCAGAGATCCGGAAGCAGCTCTTTGGACAAGTTGCTGCTTGA 693 0.4343 MNDSDVSKQIDQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLLEAEKKKIRQEYERKEKQVDIRKKIEYSMQLNASRIKVLQAQDDVVNSMKEAASKELLSLSNYDTVYRILLKDLIVQSLLRLKEPSVILRCREDDLHLVEEVLDSAAQEYSDKENVYLPEIIVDNNVFLPPAPSHHNVHDLHCSGGVVLASRDGKIVFENTLDARLDVLFRSKLPEIRKQLFGQVAA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1171 230 Pfam ATP synthase (E/31 kDa) subunit 16 225 IPR002842 GO:0033178|GO:0046961|GO:1902600
Lal16g1171 230 Hamap V-type proton ATPase subunit E [atpE]. 8 226 IPR002842 GO:0033178|GO:0046961|GO:1902600
Lal16g1171 230 Coils Coil 38 61 - -
Lal16g1171 230 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 230 IPR002842 GO:0033178|GO:0046961|GO:1902600
Lal16g1171 230 PANTHER ARCHAEAL/VACUOLAR-TYPE H+-ATPASE SUBUNIT E 1 230 - -
Lal16g1171 230 SUPERFAMILY V-type ATPase subunit E-like 87 226 - -
Lal16g1171 230 Gene3D - 92 229 IPR038495 -
Lal16g1171 230 Gene3D - 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1171 Lal-Chr16 8022469 8025617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1171 1 230 Primary Pumps ATPases(2) AT4G11150 75.652 1.96e-125 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1171 K02150 - qsu:112031179 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1171 16 8022469 8025617 Lal16g1171 16 8022469 8025617 ECH
Lal16g1171 16 8022469 8025617 Lal15g1429 15 16417328 16426397 LSH
Lal16g1171 16 8022469 8025617 Lal23g0421 23 6851877 6854791 LSH