Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1170 ATGCTTGGAGCCAATGTGGAGAATAAACAAGCAGAAACATCTTGTTTCCGTGCTAGAAGTGGAAAACTTAGTACATCTGAAATGAAATTCCTTTACATTTTCGTTTCTATTTATGTGTTTGGTTTGATTTTGTGGCAAGGAAATGGTGAAGCTGTTGAAGATAAGGAAATTTTGCTTGATTTTGTGAAAAAGTTCCCACCTTCAAGGCCATTGAATTGGAATGAGAGTTCTTCAGTGTGTGATAATTGGACTGGTGTGACTTGCAATGAAGAGAAGTCAAGAGTTATAGGTATTAGATTACCAGGTGTTGGATTTCATGGTACTATTCCACCTAACACTATTAGCCACCTTACTTCACTGCAAATTTTGAGTCTCAGATCCAATATCATAAGTGGAAATTTCCCTGCTGATTTTTCTAATCTTAGGAACTTGTCTTTTCTTTATCTTCAGTTCAATAATTTGTCTGGTCCTTTGCCTGATTTCTCTGCTTGGAAGAATCTTACTATGGTTAATTTGTCTAATAACAATTTCAATGGCAGTTTGCCTGTTTCGCTTTCGAATTTGACTCAGCTTGCAGCCTTGAACCTTGCGAATAATTCGATTTCTGGTAGAATCCCTGATCTTAATTTGCCTAGGTTGCAAATGCTTAATTTGTCTAACAACAATTTGCAAGGCAGTGTGCCGAAATCGCTTAAGAGGTTTCCTGAATCAGCATTCTTAGGGAATAACATTTCTCTTGGAGTTGAAAATTCTTCTGCTGTTTCGCCGCTGCATCAAATTCCGGCTTATGAGCCATCTTTGGAGTCTAAGAAACATGGAAGGCTTAGTGAAACAGCACTGCTGGGTATTATTATTGCTTGTGCTATTATTGGCCTTGTAGGGTTTGTGTTTCTTGTGTTTGTGTGCTTCTCTAGAAGGAGAAGGGGTGAAGATGATGATGCCTTTAGTGAGAAATTGCAGAAGGGAGGAATGTCTCCCGAAAAAGCTGTCTCAAGGAACCAGGATGCAAATAATAAACTGACTTTCTTCGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCAGAGGTGTTGGGGAAGGGAACATTTGGTACTGCATACAAAGCAGTACTAGAGGATGCGACTGCCGTTGTTGTGAAGAGGTTAAAGGAGGTAGCTGTTGGAAAGAAGGATTTTGAGCAACACATGGAGATTGTAGGAAATATTAAACATGAGAATGTGGTTGAGCTGAAGGCATATTATTATTCCAAAGATGAGAAACTAATGGTATATGATTTTTATAGTGAAGGGAGCATCTCTTCTATGTTGCATGGTAAAAGAGGAGAGGACAGGGTGGCTTTAGATTGGGATACTCGGCTGAGAATAGCTCTAGGTGCTGCAAGAGGAATAGCACGCATCCATATTGAGAATGGTGGTAAGCTTGTACATGGCAGCATCAAATCTTCAAATATCTTTCTCAATGCAAAACAGTATGGTTGTGTGTCTGACCTTGGCCTGGCAACAATAATGAGCTCGCTCGCCCTACCCATTTCTCGAGCTGCTGGTTACCGTGCACCTGAAGTTACAGACACTCGAAAAGCAGGACAACCTTCTGATGTTTACAGCTTCGGTGTCGTGTTACTAGAGCTTCTGACTAGGAAATCCCCTATCCACACAACCGGTGGCGATGAGATAATCCACCTGGTGAGGTGGGTTAATTCAGTCGTGAGAGAGGAGTGGACAGCTGAAGTATTTGACTTAGAGCTTATGAGATATCCAAACATAGAGGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTAAGGATACCTGATCAGAGACCGAAGATGCCCGAAGTCGTAAAGATGATAGAAAATGTCAGGCAGATCGATACAGTGACTCAACAGCCATCATCATCAGATAACCAAGAACAACATAAATTGCCTCAATGCGAAGACGAAAACACCTCTTTGGCACCCTCCTCCCCCTTCTCAAAAGTAAGTGAATGA 2013 0.4118 MLGANVENKQAETSCFRARSGKLSTSEMKFLYIFVSIYVFGLILWQGNGEAVEDKEILLDFVKKFPPSRPLNWNESSSVCDNWTGVTCNEEKSRVIGIRLPGVGFHGTIPPNTISHLTSLQILSLRSNIISGNFPADFSNLRNLSFLYLQFNNLSGPLPDFSAWKNLTMVNLSNNNFNGSLPVSLSNLTQLAALNLANNSISGRIPDLNLPRLQMLNLSNNNLQGSVPKSLKRFPESAFLGNNISLGVENSSAVSPLHQIPAYEPSLESKKHGRLSETALLGIIIACAIIGLVGFVFLVFVCFSRRRRGEDDDAFSEKLQKGGMSPEKAVSRNQDANNKLTFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAVLEDATAVVVKRLKEVAVGKKDFEQHMEIVGNIKHENVVELKAYYYSKDEKLMVYDFYSEGSISSMLHGKRGEDRVALDWDTRLRIALGAARGIARIHIENGGKLVHGSIKSSNIFLNAKQYGCVSDLGLATIMSSLALPISRAAGYRAPEVTDTRKAGQPSDVYSFGVVLLELLTRKSPIHTTGGDEIIHLVRWVNSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRIPDQRPKMPEVVKMIENVRQIDTVTQQPSSSDNQEQHKLPQCEDENTSLAPSSPFSKVSE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1170 670 MobiDBLite consensus disorder prediction 653 670 - -
Lal16g1170 670 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1170 670 Pfam Leucine rich repeat N-terminal domain 53 89 IPR013210 -
Lal16g1170 670 MobiDBLite consensus disorder prediction 634 670 - -
Lal16g1170 670 Gene3D Ribonuclease Inhibitor 53 162 IPR032675 -
Lal16g1170 670 ProSiteProfiles Protein kinase domain profile. 357 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g1170 670 SUPERFAMILY Protein kinase-like (PK-like) 361 625 IPR011009 -
Lal16g1170 670 Gene3D Transferase(Phosphotransferase) domain 1 433 654 - -
Lal16g1170 670 Gene3D Ribonuclease Inhibitor 163 257 IPR032675 -
Lal16g1170 670 PANTHER OS05G0588300 PROTEIN 46 640 - -
Lal16g1170 670 Gene3D Phosphorylase Kinase; domain 1 324 431 - -
Lal16g1170 670 PANTHER PROTEIN, PUTATIVE-RELATED 46 640 - -
Lal16g1170 670 SUPERFAMILY L domain-like 65 234 - -
Lal16g1170 670 ProSitePatterns Protein kinases ATP-binding region signature. 363 394 IPR017441 GO:0005524
Lal16g1170 670 Pfam Leucine rich repeat 108 154 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1170 Lal-Chr16 8011135 8015876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1170 43 628 Receptor kinase-like Gene Family AT4G23740 66.498 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal16g1170 Pkinase 3.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1170 - - lang:109349930 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1170 16 8011135 8015876 Lal16g1170 16 8011135 8015876 ECH
Lal16g1170 16 8011135 8015876 Lal15g1440 15 16588792 16591881 LSH
Lal16g1170 16 8011135 8015876 Lal23g0422 23 6890408 6894685 LSH