Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1169 ATGGCTACACCTTTTATCAAACACACTAACCACTTCAACCACACCAAACTTCTCATGAAGGACCCGTATCCGTATCCTAGAGTGATACGAATACGAGTCACCGATGTCGACGCCACGGACTCTTCCAGTGACGACGACGAAGAAGCCTCGGAGTATTTCACGCGCCGCCGTGTGAAGAACTTCGTTAATGAAATTACAATTACTGGCACGTGTTCTAGTGATAACAAAGGCGGCAAAGTTAGGAAGAGAAGCAGGGCTAAGTCCAGAATCTCAGATGAGGCTCCGGTGAAGTGCCGTCGGAAAGTTGAAAGGTTCCCCGGCGAGAAGAAGTTCCGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCCGCTGAGATAAGAGACCCTTTACGGCGGAGAAGGTTGTGGTTGGGTACTTACGACACCGCTGAAGAAGCTGCTATGGTGTATGACAACGCTGCCATTCAGTTACGTGGCGCTGACGCGCTCACCAATTTCATAACACCGCCGGGGAATAAAAACTCCGATTACAATTCCGGCGAAGAGTCTCCAAACAACAACAACAAAGACTCGTTTTCACCCACTTCCGTTCTTCAATGTTCTTCCTCATCTGAAGAAGTTAACTCTGTTGTATCTTTAACTGCCAGAAACGACGTCGTTGCTGATCACGCGTGTGAAACTCAATCACGTGACGAGAATGAATATTCATGCATGTCGGGGAATTTATTAAGTGAGGAAGTTTCAGGTGATACGTTATACAAATCTGAGTCAATATTTCCAAGCGATGAAATGTTTGATATTGAAAACATGTTTCCGGAACCTAGTGAAATGTTTGATAGCAACATGTTCACTGATAATGATTTCTCATGTGGTTTTCTCACTTCTAGTGACAATTTGGATTATGGTTTCACAAGTTGTTGGCATAGAGATTATGATAATTTCCAAGATATTGGAGATTTGTTTGTTATGGATACTCTCTTGGCTCGGTGA 990 0.4495 MATPFIKHTNHFNHTKLLMKDPYPYPRVIRIRVTDVDATDSSSDDDEEASEYFTRRRVKNFVNEITITGTCSSDNKGGKVRKRSRAKSRISDEAPVKCRRKVERFPGEKKFRGVRQRPWGKWAAEIRDPLRRRRLWLGTYDTAEEAAMVYDNAAIQLRGADALTNFITPPGNKNSDYNSGEESPNNNNKDSFSPTSVLQCSSSSEEVNSVVSLTARNDVVADHACETQSRDENEYSCMSGNLLSEEVSGDTLYKSESIFPSDEMFDIENMFPEPSEMFDSNMFTDNDFSCGFLTSSDNLDYGFTSCWHRDYDNFQDIGDLFVMDTLLAR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1169 329 MobiDBLite consensus disorder prediction 73 93 - -
Lal16g1169 329 MobiDBLite consensus disorder prediction 166 198 - -
Lal16g1169 329 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 324 - -
Lal16g1169 329 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Lal16g1169 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 324 - -
Lal16g1169 329 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Lal16g1169 329 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Lal16g1169 329 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Lal16g1169 329 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Lal16g1169 329 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Lal16g1169 329 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Lal16g1169 329 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Lal16g1169 329 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1169 Lal-Chr16 7995525 7996514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1169 1 328 AP2-EREBP Transcription Factor Family AT4G23750 40.331 9.52e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g1169 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1169 - - gmx:100813992 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1169 16 7995525 7996514 Lal16g1169 16 7995525 7996514 ECH
Lal16g0082 16 494329 495387 Lal16g1169 16 7995525 7996514 PCT
Lal23g1549 23 15585090 15586043 Lal16g1169 16 7995525 7996514 PCT