Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1162 ATGGCTGACATAATTGCTCAAGTTCCCACAAAGAGAGCAAGGGGAAACAGAAAGGCGCTGAAGGAGAAAATCCCATCAACTAGTGAAGCCAACATCTTAGCTTCTGCTAAAGTTTCTGAGTCCACTATCATGCCATGTTCTCTTTCGTCCGAGGCGGCGAAACAGAACTACAACGAAGGCAGCCTTTCTCATCCGAAGAAGGGAAAGGCTGCCTCGAAGAAACAGCAAAAAAATTTTGAGAAAGATTTGCTTGAAATGCAGGAAAAGCTTCAACAACTGCGTCTCGAGAAAGAGAAGACTGAAGAGCTATTGAAGGTTAAAGACGAGGCTTTGAAACAGAAGGAGGAAGAGCTTGAATTCCGTGATCGTGAGCAAGAGAAGCTTCATATAGAGCTCAAGAAGTTGCATAAGTTAAAGGAGTTCAAACCCACCATGGTTGTGGTGGCCATCGCCATCGCATCACATCGCAATTGTAGTAATTTGCCTTTGGTGAAAGACAAGGAACAAGAAAAGAAGGACAGAAAGAATGGGTGCTCTGAGACGAAGAGGCCTTCTACACCCTACATTTTATGGTGCAAAGATCAATGGAATGAGATTAAGAAAGAGAACCCAGAGGCAGAATTTAAGGAAATTTCAAACATGTTGGGGGCTAAATGGAAGACAGTGAGTGCAGAAGAAAAGAGGCCTTATGAAGAGAAGTACCATGTTGAGAGGGAAGCTTATTTACAAGTAATGGCTAATGAAAAGCGTGAGAGTGAGGCAATGAAGCTTTTGGAAGAGGAACAGAAGCACAAAACTGCCATGGAATTGCTTGAACAATATATTCAGTACAAACAAGAGACAGAAATAAAAACCAAGAAGAATAAGAAAGAGAAGGATCCATTGAAACCAAAGCATCCCATGTCAGCTTATTTCTTGTTCACAAATGATAGGAGGCCAGCTCTTCTTGCAGAGAACAAAAAGGTGCTGGAGGTCTATCGATCCACTTTTGCACAATGTGCGACTTCTTCTTTCATAGTCGGAATAGCCAAAGTTTCTAAGATCACAGCTGAAGAGTGGAAAAACATGACAGAGGAACAAAGGAAACCTTATGAACAGATTGCAAAGAAAAACAAGGAGAAATACATGCAAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCAAATCTCATGAAGGAAGAAGAGGAGCATATGAAACTTCAAAAACAGGAAGCCATGCAACTGCTGAAGAAGAAGGAGAAAACTGAAAATCTGATCAAGCTAATCCACCTAAAACACATGCAGAAAACAAAACTGAACAACCAGAAGAAGAAGAAGCAAAGCAAGGAAGATAAGAATTCTGATCCTAACAAGCCTAAGAGGCCTGCATCCTCATTCATCCTATTCAGCAAATATGCAAGGAAAACTTTACAAGAGCAAAGACCAGGAGTTAATACCTCAACCCTTAATGCACTGATTTCATTGAAGTGGAAGGAACTGAGTGAGGAAGAGAGACAATACTGGAATGGAAAAGCATCTGAAGCAATGGAAGCATACAAGAATGAATTGGAGAAATATAACAAGTTCGTTGCTGCAACTGCAAGTGAGATTAACATTGATGAATGA 1614 0.4089 MADIIAQVPTKRARGNRKALKEKIPSTSEANILASAKVSESTIMPCSLSSEAAKQNYNEGSLSHPKKGKAASKKQQKNFEKDLLEMQEKLQQLRLEKEKTEELLKVKDEALKQKEEELEFRDREQEKLHIELKKLHKLKEFKPTMVVVAIAIASHRNCSNLPLVKDKEQEKKDRKNGCSETKRPSTPYILWCKDQWNEIKKENPEAEFKEISNMLGAKWKTVSAEEKRPYEEKYHVEREAYLQVMANEKRESEAMKLLEEEQKHKTAMELLEQYIQYKQETEIKTKKNKKEKDPLKPKHPMSAYFLFTNDRRPALLAENKKVLEVYRSTFAQCATSSFIVGIAKVSKITAEEWKNMTEEQRKPYEQIAKKNKEKYMQEMEAYKQKKDEEAANLMKEEEEHMKLQKQEAMQLLKKKEKTENLIKLIHLKHMQKTKLNNQKKKKQSKEDKNSDPNKPKRPASSFILFSKYARKTLQEQRPGVNTSTLNALISLKWKELSEEERQYWNGKASEAMEAYKNELEKYNKFVAATASEINIDE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1162 537 Coils Coil 365 421 - -
Lal16g1162 537 Coils Coil 69 131 - -
Lal16g1162 537 Pfam HMG (high mobility group) box 455 523 IPR009071 -
Lal16g1162 537 Pfam HMG (high mobility group) box 181 246 IPR009071 -
Lal16g1162 537 SMART hmgende2 454 524 IPR009071 -
Lal16g1162 537 SMART hmgende2 296 384 IPR009071 -
Lal16g1162 537 SMART hmgende2 180 250 IPR009071 -
Lal16g1162 537 MobiDBLite consensus disorder prediction 54 76 - -
Lal16g1162 537 CDD HMGB-UBF_HMG-box 297 380 - -
Lal16g1162 537 Gene3D High mobility group box domain 164 265 IPR036910 -
Lal16g1162 537 SUPERFAMILY HMG-box 172 247 IPR036910 -
Lal16g1162 537 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 297 383 IPR009071 -
Lal16g1162 537 MobiDBLite consensus disorder prediction 428 461 - -
Lal16g1162 537 Gene3D High mobility group box domain 435 526 IPR036910 -
Lal16g1162 537 Gene3D High mobility group box domain 277 387 IPR036910 -
Lal16g1162 537 CDD HMGB-UBF_HMG-box 455 520 - -
Lal16g1162 537 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 327 - -
Lal16g1162 537 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 342 531 - -
Lal16g1162 537 SUPERFAMILY HMG-box 450 523 IPR036910 -
Lal16g1162 537 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 327 IPR044601 GO:0003677
Lal16g1162 537 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 342 531 IPR044601 GO:0003677
Lal16g1162 537 MobiDBLite consensus disorder prediction 1 22 - -
Lal16g1162 537 Pfam HMG-box domain 295 382 IPR009071 -
Lal16g1162 537 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 181 249 IPR009071 -
Lal16g1162 537 SUPERFAMILY HMG-box 283 390 IPR036910 -
Lal16g1162 537 CDD HMGB-UBF_HMG-box 182 246 - -
Lal16g1162 537 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 455 523 IPR009071 -
Lal16g1162 537 MobiDBLite consensus disorder prediction 440 454 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal16g1162 HMG_box_2 7.9e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1162 K09273 - gmx:100783033 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1162 16 7929958 7932820 Lal16g1162 16 7929958 7932820 ECH