Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1147 ATGGACACCTTTATAACATCCTCCTCCGACCTCTCCTCTCTCTGGCTGCAACCACCGCACTCAGCACCATCCACCACCACACCAGATCCAACACGATCATCACAAACTTTCTTCAATCAGGAAACACTACAACACCGGCTTCAGTCACTTATCGAAGGCGCGAAAGAGAGTTGGACTTATGCTATATTCTGGCAATACGATTACTCACCTGGTTCTTCTCTCCTTGCTTGGGGTGACGGTTACTATAAAGGGGAAGAAGATAAAAGGAATTTGAACAAAATCATTTCGTGTGATGAGCAAAATCATCGTAAGAAGATTTTGAGAGAGCTCAATTCTCTTATTGCGGGTCCTTCAACAACTTCAATTGATGATGCTATTGATGAGGAAGTTACAGATACGGAATGGTTCTTTCTTATGTCTATGACTCAGTCGTATATCAATAGTGACAGTATACCAGGACAGGCATTCTTTAATTCTAGTCCTGTTTGGGTCTCTGGCGCTGATCGGTTATCGGGATCGGCTTGTGAGCGATCGCGCCAGGGACAGGTTTTTGGATTACAGACTTTGGTTTGTATACCGACGCCAAATGGCGTGGTTGAGCTTGGTTCTACGGAATTGATTTTTCAAAACCCTGATTTGATGAATAAGGTGCAGGTTTTGTTTAATTTCAATAAAAACGGTGATGCTTGTTCGCTATTGCCGTTGAATGCTAATGTGGCTGATCAGGGTTTGACTAACCCTTGTTCCTCACTTTGGCTCGGTGATCCGTCTCGTAGGATTGGAATTGGAGATTCCGGTAGCAGCCAGGGTAAGTTGAATATATCAACTGGTAAAAGAATGACATTGCAGTTTGAAACCCCTGGTTCTAGCACTTTGAATGAAACACCAAGTGCTGTTGTTGTTTCTAATAATGCTCACACTCACCGGGGCCAGCAGCAGAACCAGGACCAGAACTTATTTTCAAGGGAATTGAACTTTTCGAGTTCCTTGAAGCTGGAGTCTGGTGAGATTCTGAGCTTTAGGGAGAGCAAGAAGATCTCTTATAACAGTGTGGCGAATGGGAATTTGATTTCAGGTCAGTCACAGTCTGTTTTTGCTGAGGAGAACAAGAGGAGTTCTGTTGTTTCCAGGAGCAGCATTGACGATGGAATGCTTTCGTTCACATCCGGTGTGATCTTGGCAGCTTCCAATGTTAAGTCTGGTGGTGATTCTGATCATTCGGATCTTGAAGCTTCTGTGGTGAAGGAGGCAGATAGCAGAGTGGTGGAGCCAGAGAAACGACCAAGGAAAAGGGGGCGAAAGCCGGCGAATGGCAGAGAGGAGCCGTTGAATCATGTCGAAGCTGAGAGGCAGAGAAGAGAGAAGCTCAATCAGAGATTCTATGCACTTCGTGCAGTGGTTCCGAATGTGTCCAAAATGGACAAAGCATCGCTCCTTGGTGATGCCATATCTTACATCAATGATCTGAAGTCAAAGGTTCAAAGGGTAGAATCAGAGAAAGGTGAATTGGAGAAGCAGTTGGATCGTGCAAAGAAGGAACTCGAGCTTGCAAGTAAGAATCTGGGGGAAGCACCACCTCGGCCTGATAAAGAGAACAATCAGATTGGAAGCAAGCTGATCGATTTGGATATCGATGTAAAGATTGTTGGTTGGGATGTGATGATTCGAATCCAATGTAACAAGAAGAATCACCCTGCAGCGAGACTGATGGCAGCTCTGAAGGAGCTTGACTTGGATGTGCACCATGCCAGTGTCTCTGTAGTGAATGATTTGATGATCCAACAGGCGACCGTGAACATGGGAAGCCGTTTTTACACACAGGAGCAGCTCCTATCAGCACTATCCTCTAAAGTTGGCTATGTGCTATAA 1869 0.4516 MDTFITSSSDLSSLWLQPPHSAPSTTTPDPTRSSQTFFNQETLQHRLQSLIEGAKESWTYAIFWQYDYSPGSSLLAWGDGYYKGEEDKRNLNKIISCDEQNHRKKILRELNSLIAGPSTTSIDDAIDEEVTDTEWFFLMSMTQSYINSDSIPGQAFFNSSPVWVSGADRLSGSACERSRQGQVFGLQTLVCIPTPNGVVELGSTELIFQNPDLMNKVQVLFNFNKNGDACSLLPLNANVADQGLTNPCSSLWLGDPSRRIGIGDSGSSQGKLNISTGKRMTLQFETPGSSTLNETPSAVVVSNNAHTHRGQQQNQDQNLFSRELNFSSSLKLESGEILSFRESKKISYNSVANGNLISGQSQSVFAEENKRSSVVSRSSIDDGMLSFTSGVILAASNVKSGGDSDHSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINDLKSKVQRVESEKGELEKQLDRAKKELELASKNLGEAPPRPDKENNQIGSKLIDLDIDVKIVGWDVMIRIQCNKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVNMGSRFYTQEQLLSALSSKVGYVL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1147 622 Coils Coil 486 520 - -
Lal16g1147 622 Gene3D - 439 518 IPR036638 GO:0046983
Lal16g1147 622 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 443 509 IPR036638 GO:0046983
Lal16g1147 622 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 43 221 IPR025610 -
Lal16g1147 622 PANTHER TRANSCRIPTION FACTOR MYC2 25 618 - -
Lal16g1147 622 PANTHER MYC 25 618 IPR045084 GO:0003700|GO:0006355
Lal16g1147 622 SMART finulus 446 495 IPR011598 GO:0046983
Lal16g1147 622 MobiDBLite consensus disorder prediction 403 450 - -
Lal16g1147 622 MobiDBLite consensus disorder prediction 397 450 - -
Lal16g1147 622 Pfam Helix-loop-helix DNA-binding domain 444 489 IPR011598 GO:0046983
Lal16g1147 622 CDD bHLH_AtAIB_like 437 513 - -
Lal16g1147 622 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 440 489 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1147 Lal-Chr16 7825009 7826877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1147 1 619 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.738 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g1147 bHLH-MYC_N 4e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1147 K13422 - gmx:100790854 741.88