Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1144 ATGGAAGTAGAAGCTGAAGCGGAATCCGATTTCGTGATGAATGACATGCTCACACACACTTATGATCATGATCCTTTTGATGATGATAACGACAATGGTAATTTAGCTATCGAAGGGGAAAGGTGTGGAATATGCATGGATGTTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTCTGTCCACTTTGCCAGAATGAGTTTCAATTGATCACTTGTGTTCCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGATGAGTCATACTTCAGGGATGATGACTGGTCTATTGAAGGGAAGAGTAACACTCTGTCATTTCCCTCCTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATCAGCGTCTATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAAGCACATCTGACAGTACGTGGTTATGCCCAAGATGTGTAGTTGGTGAAGTTTCTAAAGGAACAGACTCTAATTCCATAGAGTGGACAGCTGAGGAATGTAACCCAGAGAACAGCAACAGTAAATGTAAGGCTGAGGATTCCTTTTCAAGGAAAGTGTCTGTGTCTGTTGCTGATACTGGAGATACAGCTGTTGTTGTTTCAATGGTTGATGGGAATAAATGGATTCCTGCAACAAGCGAGAAAGACATGTTTCCTCTTGAAGTTGATGGGGATCCACTGAATGAATCACATGTTTTAATGTCTGATACACATAATGAGCAGAACGGGGCAAAGAAGACTACTACCACACCAATCGTGGAGGAACAGGAACTAGAACTGTGCTTATCCAACAATGTATCCGGTAGCCTAACTTTTAAATCCTTGGTGCATAATGATTTAAACAAAAGTATCCATGGAGCAAAGGGTGAAAAAAGTAGCTTTGTTGGAAAGAAGTTATTGGATGAATCCCATGTCAAATGTAGTCCATCCAGAAATGAATCTGACATGGGTCTTCATCTTGGTTTGTCGGTGGGATCTTTTTTATCTGTTGATAAAGCAGATGAGAATGAAACAAAAGATCAAGCAACTGTTATCCTGCACCCGAGTCCAGAAGAACCTTTTTTGAAAGTTGATACAGCGGATAGGAAAAAGCAAGCAATGGATATCCCACAGTTGAGTCCAGAAAAAACATTTTTGAAAGGACATGAAATTGGAACTGCTACTCATAAGGACAATGCCAGAGTGACTGCTAGAAAGAGAAAACATGTTGATTGCAGTTATGATCAAGTTCATATAAAAGTTGATGATGGAGATTCCAAGCCTGAACTCTTGGTTGAAATTTCACAGAAGAAAATTAGAGCTGCTGGTAGTCAAATGATCAGTGCTAATAACTTAGCTGATGCTCCTCCTTCAGACAATGCTAAACAACACCCTGCATTAAAACCTTCTCCAACAAGGGAAGTTGTTGCCTCAGATATATTGAATATAGTTAAAGGGACGAACAGGAGGGTTTCCAAGGGACGTGCTGGAACTAATGCTTGTGACAAGTTATCTGAAAAGAAAGAAAATATGGCTGGATTGAGGGTAAAGAAGATCATGAAGAGAGTTTCTGATGGAGAATCATCCTTGATGGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATGCTCTATAAACTTTGAGGAAAACCATTTTGATACAAAGCTTCTTGCAGCATTTAGAGCTGCTATTGCAGGACCTAAAACTGAACCTGTAAATAAGTTATCTCCATCAGCTCTTAAGGCGAAGAAGACAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAAGAAAATTTTTTCGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGCGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTACAAAGCCTGAAAAGATCGAAACTTTAAAGTCAGTTCTTGATCTACTAAGAAAAAGTTCAGAGGACCCAGAATCAACGCAAACTCCTGAGTGCCGGGCCAAGGATCCTATTCTTTCTAGGTTGTATTTAGCAGATACATCTGTTTTCCCTCGTAAAGATGATGTCAAGCCTCTTTCTATACTTAAAACCAGTGCTAGCTCCGAGCAAACTAAACAAAATAACCCACCAGGAAAAGGATCAAACCTATTTCTTAATAACAATACTACTAAAGCAACAGTGGCAAATAATTTTTTATCAAAAATCGGAATTTGTTCATCTGAAGGGAAAGCTAATAGACAGATTGTTAATGGCTCAGCTGGTGATAATTCAACTTCTGGTAAAGTACATTTTAGCAGTCAATCAGGAGTGAAATTGGTTTCTTCTTCAGCTGGTGCCAAAGTTGCAACAAAGGAGTTAGGCCTTAAACCAGATTCTACTAAGATTGATAAAAAGAAATGGGCCTTAGAGATTCTTGCAAGGAAAACAGCTGCTGCAAGCAAGAACACATCAAATGAAACTCAGGAAGACAATGCAATTTTTAAAGGCAATTATCCTTCGCTTGCCCAATTACCAACTGATATGAGACCAGTATTGGCGCCTTGTCGCCACAACAAAATTCCTATATCAGTGAGGCAGACGCAGCTTTACCGCCTGACTGAGCGCTTGTTGAGGAACGCAAATTTGTCGGTCATTCGCCGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGATGTTGCTGACAGATCAAATAGCAAACTTGTGTATCTGAACCTCTGTTCCCAGGAGCTCTTGCATCGCACAAATAACACAAAATCCACTGCAGTCAAAGATACAAATCCACCAGGCTCATCAGCAGAGCTTACTGATCAATTAGAACAAAATACAGATGATCAATCTAGTGACCCTGAAGTTGAGATAGCCCTGAAAAATGCTGGTCTATTGTCTGATTCGCCACCTAGCAGTCCACAAGAGAACAGAGAAATATGTAAAGATGACATGTCAGGGCCCGATAATATACTTGAACTGGATTCTCATCCCGAACTGGATATATATGGTGATTTTGAGTATGATCTGGAAGATGAAGATTACATCGGTATTACAAAGGTCTCAAACCCAAAACAAGAGGAAACTGAGTCGAAAGTGAAACTGGTTTTCTCCACCATGAAATTGAAGTCAGATATTCCTTTGGAATGTGCAGTTGGTGAGGGGTCGGAAAACATTGAAGTGCCACAAGATGCCTCATGCTCACCAAACTGTCACAATGATGCAGTCCTTATGGATTCCACTACCAATGTGGAGATTGGCCAGCCTTCTGCTTCTTCTGAGCTCCCACTCTGTGAGGGTTCTGTTGAACTATTTGATTCAGAATTTGATGAATTATATGGCCCTGACAAAGAACTACTTCTCAAAAAAGTTCCGGATGGTGAACCAAGAACGTTATGTGGAGAGGGCAAGACAGAAGCTCTAGGTGAGGCTAATGACTGCCATAACAAAAAAAATGTGTCTGTTACTGCCATCACTGATAAATCTTGTAATACATCTGAAACTGCTGAAAATGCTCCAAGGACGGAAGAGAAATCCGAGAAAAGTGCCAAGCAGTCTGGCTCTTTGAATCATGTAGCTAAGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCACTTTGCAAGAGCGATGTGATCACGACTGAACAATACAGGTGGGCTGTTGCGAAAACAACCGAAAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCCAGTTTCCTCATCAAGGAAGGTGAGAAAGTGAAGAAACTTGCAGAGCAGTATGTTGAAGCTGCCCAACAGAATAAAAAGAATTGA 3912 0.4039 MEVEAEAESDFVMNDMLTHTYDHDPFDDDNDNGNLAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDESYFRDDDWSIEGKSNTLSFPSYYIDENAVICLDGDGCKVRSGSASIEEDSGLDTSIACDSCDIWYHAFCVGFDTESTSDSTWLCPRCVVGEVSKGTDSNSIEWTAEECNPENSNSKCKAEDSFSRKVSVSVADTGDTAVVVSMVDGNKWIPATSEKDMFPLEVDGDPLNESHVLMSDTHNEQNGAKKTTTTPIVEEQELELCLSNNVSGSLTFKSLVHNDLNKSIHGAKGEKSSFVGKKLLDESHVKCSPSRNESDMGLHLGLSVGSFLSVDKADENETKDQATVILHPSPEEPFLKVDTADRKKQAMDIPQLSPEKTFLKGHEIGTATHKDNARVTARKRKHVDCSYDQVHIKVDDGDSKPELLVEISQKKIRAAGSQMISANNLADAPPSDNAKQHPALKPSPTREVVASDILNIVKGTNRRVSKGRAGTNACDKLSEKKENMAGLRVKKIMKRVSDGESSLMVQNLRKEIREAVRNKCSINFEENHFDTKLLAAFRAAIAGPKTEPVNKLSPSALKAKKTMLQKGKVREHLTKKIFSTSNGRRKRAWDRDCEIEFWKYRCTRATKPEKIETLKSVLDLLRKSSEDPESTQTPECRAKDPILSRLYLADTSVFPRKDDVKPLSILKTSASSEQTKQNNPPGKGSNLFLNNNTTKATVANNFLSKIGICSSEGKANRQIVNGSAGDNSTSGKVHFSSQSGVKLVSSSAGAKVATKELGLKPDSTKIDKKKWALEILARKTAAASKNTSNETQEDNAIFKGNYPSLAQLPTDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNANLSVIRRTADTELAVADAINIEKDVADRSNSKLVYLNLCSQELLHRTNNTKSTAVKDTNPPGSSAELTDQLEQNTDDQSSDPEVEIALKNAGLLSDSPPSSPQENREICKDDMSGPDNILELDSHPELDIYGDFEYDLEDEDYIGITKVSNPKQEETESKVKLVFSTMKLKSDIPLECAVGEGSENIEVPQDASCSPNCHNDAVLMDSTTNVEIGQPSASSELPLCEGSVELFDSEFDELYGPDKELLLKKVPDGEPRTLCGEGKTEALGEANDCHNKKNVSVTAITDKSCNTSETAENAPRTEEKSEKSAKQSGSLNHVAKKVEAYIKEHIRPLCKSDVITTEQYRWAVAKTTEKVMKYHCKAKNASFLIKEGEKVKKLAEQYVEAAQQNKKN 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1144 1303 SMART PHD_3 140 192 IPR001965 -
Lal16g1144 1303 MobiDBLite consensus disorder prediction 959 991 - -
Lal16g1144 1303 MobiDBLite consensus disorder prediction 1201 1226 - -
Lal16g1144 1303 Pfam PHD-finger 156 192 IPR019787 -
Lal16g1144 1303 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Lal16g1144 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 105 IPR013083 -
Lal16g1144 1303 ProSiteProfiles Zinc finger PHD-type profile. 74 194 IPR019787 -
Lal16g1144 1303 SUPERFAMILY FYVE/PHD zinc finger 157 196 IPR011011 -
Lal16g1144 1303 PANTHER RING/U-BOX PROTEIN 112 1300 - -
Lal16g1144 1303 ProSiteProfiles Zinc finger RING-type profile. 42 81 IPR001841 -
Lal16g1144 1303 MobiDBLite consensus disorder prediction 732 751 - -
Lal16g1144 1303 Pfam Zinc finger, C3HC4 type (RING finger) 42 80 IPR018957 GO:0046872
Lal16g1144 1303 MobiDBLite consensus disorder prediction 959 990 - -
Lal16g1144 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 192 IPR013083 -
Lal16g1144 1303 SUPERFAMILY RING/U-box 15 87 - -
Lal16g1144 1303 PANTHER RING FINGER PROTEIN 41, 151 112 1300 - -
Lal16g1144 1303 SMART ring_2 132 191 IPR001841 -
Lal16g1144 1303 SMART ring_2 42 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1144 Lal-Chr16 7798937 7808124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1144 42 128 C3H Transcription Factor Family AT3G58030 31.579 1.24e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal16g1144 PHD 2.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1144 - - gmx:100808102 1822.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1144 16 7798937 7808124 Lal16g1144 16 7798937 7808124 ECH