Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1130 ATGGCTATGGAAGAGGGTGATGATCAATTCTATGATACTTGTGAGGGGTTGTGTTCTGTCTCTGATGTGGATTCAGATTCCTTAGAAGCAAATGAATCTAGTGATGCTAATGGATATGTTACTAGTTATCAGGTTTGGATAAATAATCTTGAAAGTGTTCATTCGAGACGCCTCAATTTCATAAGATGGATGTGTTTAGAGGCCGGTTCTGATATGAGTTTAATGTTTGGAAGTGAGGAGTTGGTAGATCCATCTTGTGGAGTTGACCGAATCACGGCAAGGAGTGGAGCAGTGCTGAGAACTTCAGGTTCTGTAGACAGCTCAAGCCAGATTGTCTCGAATTCTTTGTCTAATGAGGCCACTATTATAGAAAATCGCAGTGTTGAGGAGAATTTGGCATGTATGGTAGAGAATTTGGATGATGGAACACGGTTCGTTATTGATAAACTGGGCCAGGATGGAAAGCTTAGCACACCATGTGTTGTGGGTTCTAACCAATTAATTAGCTTGGAAGAGTTTCAAAGAACTATTATTCCAGCACCATTGGTTCAGAGACCTTTGCAGAGAGATGAAGAGAACTCAAAAAATTTCGGTGTTGTGAAAAAGAAAATGAAGTGGGATTGGCTAAAGAAACTGGGTTTGGTGGCTTGTTTTGTTCATGATCAACGGCTCGATGAAATGGACGGCAAATACTTCGATTCAGTAGATAGAAGTAGGATACAGAGAGTTACAGTTCATTCATATATGAAGCGAATTAAGGAGCTTACCTCCCTTCACATTGAACAGGAGTTCAAAGCACATAAGGGTGTTATTTTGACTATGAAGTTCAGTCTCGATGGAAAATATCTGGCTAGTGGTGGTGAAGATGGCATTGTACATGTGTGGAAGGTGGTTGAGGATGAAAGATCTAGTAAATTGGACATTGTGGACAACAACCCATCAACTACATATTTCAAAATGAATAGTTTTTCATGTCTAGCTCCCATGGATGTAGACAAAGAGAAATTAGTTGACACAGACAAGGTGAAGAGATCGTCTGGTTCAACCTGTGTGATTATCCCGCCAAAGACCTTCCGTATATCGGAGAAACCTTTGCATGAGTTCCACGGGCATAATGGCGACATCTTAGACCTCGCATGGTCCAAAAGAGGGTTTGTACTATCATCCTCAGTTGATAAGACAGTGCGCCTATGGCAAGTAGGAATTGATAGATGTCTTAGAATTTTTTCCCACAATAATTATGTGACATGTGTCAATTTCAATCCTGTCAACGATAATTTTTTCGTCAGTGGTTCAATTGATGGGAAAGTTCGCATCTGGGAAGTCCTTTGCTGTCGGGTTGTTGATTACATTAATATCAGAGAAATAGTCACTGCTGTGTGTTTCCGCCCCGATGGGAAGGGCACAATTGTGGGCACCATGACAGGCAATTGTCGTTTTTATAATATCAAAGATAATCATCTACAATTCGATGCTCAATTAAGCTTAGGAGGGAAAAAGAAGACACCAGGGAAAAGGATCACTAGCTTGCAGTTTTCACCAAATGACTCAAGCAAGTTGTTGGTTGCTTCTGCTGATTCACATGTCTGTGTACTTTCTGGAGTTGATGTCATATACAAATTCAAGGGCCTTAGAAGTGCCATTCAAATGCATGCTTCATTCACCTCTGATGGGAAACACATTGTCTCAGTTAGTGAGGACTCAAATGTTTGTATCTGGAACTATACTGGCCAGGATAGGAGTGCTTCCAAAGCCAAGAAGATTTGGTCTTCTGAGAGTTTTCTATCCCACAAAGCAGCAATTGCCATACCTTGGTGTGGCATTGAATCAATGCCATCGCTGAAGAATGATTTCAACCAGAGGTTAACTCTGTCTTCGCCCGATTGTTTCTCCTTGAACTGCGGATTTTTATCAGATTTAGTCCCAAAGGTTTCTCCAACCTGGCCCGAGGAGACACGTCTGGACTCAAGACAAAGTTCTGTTACTCCAACGATGTGTAAATCCGATTACAAGTTTTTGAGAAGTGCGTGTAAGGGAATGTCTAATTCTCACATGTGGGGTCAAGTGATTGTAACAGCAGGATGGGATGGACACATAAGAGTATACCAGAATTACGGGTTACCAGTTCGTGTTTGA 2136 0.4134 MAMEEGDDQFYDTCEGLCSVSDVDSDSLEANESSDANGYVTSYQVWINNLESVHSRRLNFIRWMCLEAGSDMSLMFGSEELVDPSCGVDRITARSGAVLRTSGSVDSSSQIVSNSLSNEATIIENRSVEENLACMVENLDDGTRFVIDKLGQDGKLSTPCVVGSNQLISLEEFQRTIIPAPLVQRPLQRDEENSKNFGVVKKKMKWDWLKKLGLVACFVHDQRLDEMDGKYFDSVDRSRIQRVTVHSYMKRIKELTSLHIEQEFKAHKGVILTMKFSLDGKYLASGGEDGIVHVWKVVEDERSSKLDIVDNNPSTTYFKMNSFSCLAPMDVDKEKLVDTDKVKRSSGSTCVIIPPKTFRISEKPLHEFHGHNGDILDLAWSKRGFVLSSSVDKTVRLWQVGIDRCLRIFSHNNYVTCVNFNPVNDNFFVSGSIDGKVRIWEVLCCRVVDYINIREIVTAVCFRPDGKGTIVGTMTGNCRFYNIKDNHLQFDAQLSLGGKKKTPGKRITSLQFSPNDSSKLLVASADSHVCVLSGVDVIYKFKGLRSAIQMHASFTSDGKHIVSVSEDSNVCIWNYTGQDRSASKAKKIWSSESFLSHKAAIAIPWCGIESMPSLKNDFNQRLTLSSPDCFSLNCGFLSDLVPKVSPTWPEETRLDSRQSSVTPTMCKSDYKFLRSACKGMSNSHMWGQVIVTAGWDGHIRVYQNYGLPVRV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1130 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Lal16g1130 711 Gene3D - 500 705 IPR015943 GO:0005515
Lal16g1130 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 400 - -
Lal16g1130 711 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Lal16g1130 711 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Lal16g1130 711 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Lal16g1130 711 SUPERFAMILY WD40 repeat-like 257 702 IPR036322 GO:0005515
Lal16g1130 711 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Lal16g1130 711 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Lal16g1130 711 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Lal16g1130 711 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 3 711 - -
Lal16g1130 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Lal16g1130 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 583 IPR001680 GO:0005515
Lal16g1130 711 PANTHER WD REPEAT DOMAIN 44 3 711 IPR040324 -
Lal16g1130 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Lal16g1130 711 SMART WD40_4 663 703 IPR001680 GO:0005515
Lal16g1130 711 SMART WD40_4 257 296 IPR001680 GO:0005515
Lal16g1130 711 SMART WD40_4 361 399 IPR001680 GO:0005515
Lal16g1130 711 SMART WD40_4 534 574 IPR001680 GO:0005515
Lal16g1130 711 SMART WD40_4 489 533 IPR001680 GO:0005515
Lal16g1130 711 SMART WD40_4 443 482 IPR001680 GO:0005515
Lal16g1130 711 SMART WD40_4 402 441 IPR001680 GO:0005515
Lal16g1130 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 442 IPR001680 GO:0005515
Lal16g1130 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 400 IPR001680 GO:0005515
Lal16g1130 711 Gene3D - 251 499 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1130 Lal-Chr16 7674844 7679244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1130 368 529 Miscellaneous Gene Families AT5G08390 25.301 3.49e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1130 16 7674844 7679244 Lal16g1130 16 7674844 7679244 ECH
Lal16g1130 16 7674844 7679244 Lal17g0582 17 4138366 4143175 ECH
Lal16g1130 16 7674844 7679244 Lal4g0507 4 3647965 3652840 ECH
Lal16g1130 16 7674844 7679244 Lal23g0525 23 8044037 8048371 LSH